Experiment: Varel_Bryant_medium_Glucose with Phenazine ethosulfate 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0090 and BT0091 are separated by 18 nucleotides BT0091 and BT0092 are separated by 4 nucleotides BT0092 and BT0093 are separated by 28 nucleotides
BT0090: BT0090 - conserved protein found in conjugate transposon (NCBI ptt file), at 83,372 to 84,397
BT0090
BT0091: BT0091 - conserved protein found in conjugate transposon (NCBI ptt file), at 84,416 to 85,045
BT0091
BT0092: BT0092 - conserved protein found in conjugate transposon (NCBI ptt file), at 85,050 to 85,406
BT0092
BT0093: BT0093 - conserved protein found in conjugate transposon (NCBI ptt file), at 85,435 to 87,939
BT0093
Position (kb) 84
85
86 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 83.465 kb on - strand at 83.567 kb on + strand, within BT0090 at 83.572 kb on + strand, within BT0090 at 83.650 kb on + strand, within BT0090 at 83.650 kb on + strand, within BT0090 at 83.721 kb on + strand, within BT0090 at 83.763 kb on + strand, within BT0090 at 83.763 kb on + strand, within BT0090 at 83.764 kb on - strand, within BT0090 at 83.764 kb on - strand, within BT0090 at 83.765 kb on + strand, within BT0090 at 83.766 kb on - strand, within BT0090 at 84.045 kb on + strand, within BT0090 at 84.046 kb on - strand, within BT0090 at 84.106 kb on + strand, within BT0090 at 84.112 kb on + strand, within BT0090 at 84.151 kb on + strand, within BT0090 at 84.179 kb on - strand, within BT0090 at 84.271 kb on - strand, within BT0090 at 84.271 kb on - strand, within BT0090 at 84.271 kb on - strand, within BT0090 at 84.338 kb on - strand at 84.397 kb on + strand at 84.398 kb on - strand at 84.417 kb on + strand at 84.444 kb on + strand at 84.520 kb on - strand, within BT0091 at 84.556 kb on + strand, within BT0091 at 84.558 kb on + strand, within BT0091 at 84.559 kb on - strand, within BT0091 at 84.672 kb on + strand, within BT0091 at 84.673 kb on - strand, within BT0091 at 84.678 kb on + strand, within BT0091 at 84.748 kb on - strand, within BT0091 at 84.815 kb on - strand, within BT0091 at 84.893 kb on - strand, within BT0091 at 85.029 kb on - strand at 85.081 kb on + strand at 85.189 kb on + strand, within BT0092 at 85.371 kb on + strand at 85.588 kb on + strand at 85.711 kb on + strand, within BT0093 at 85.789 kb on + strand, within BT0093
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Phenazine ethosulfate 0.1 mM remove 83,465 - -0.1 83,567 + BT0090 0.19 -0.1 83,572 + BT0090 0.19 -3.4 83,650 + BT0090 0.27 +0.2 83,650 + BT0090 0.27 +1.5 83,721 + BT0090 0.34 -0.1 83,763 + BT0090 0.38 -1.7 83,763 + BT0090 0.38 -3.3 83,764 - BT0090 0.38 -1.1 83,764 - BT0090 0.38 -2.7 83,765 + BT0090 0.38 -2.4 83,766 - BT0090 0.38 -2.4 84,045 + BT0090 0.66 -1.1 84,046 - BT0090 0.66 -2.4 84,106 + BT0090 0.72 -0.1 84,112 + BT0090 0.72 -2.4 84,151 + BT0090 0.76 +0.9 84,179 - BT0090 0.79 -1.1 84,271 - BT0090 0.88 -1.7 84,271 - BT0090 0.88 +0.3 84,271 - BT0090 0.88 -0.1 84,338 - -1.7 84,397 + -2.3 84,398 - -1.1 84,417 + -0.1 84,444 + -0.5 84,520 - BT0091 0.17 -0.1 84,556 + BT0091 0.22 -2.4 84,558 + BT0091 0.23 +1.9 84,559 - BT0091 0.23 -1.1 84,672 + BT0091 0.41 -1.2 84,673 - BT0091 0.41 -1.4 84,678 + BT0091 0.42 +0.9 84,748 - BT0091 0.53 +2.2 84,815 - BT0091 0.63 -0.1 84,893 - BT0091 0.76 +0.5 85,029 - -0.1 85,081 + -1.5 85,189 + BT0092 0.39 -4.4 85,371 + -1.8 85,588 + -1.2 85,711 + BT0093 0.11 -2.4 85,789 + BT0093 0.14 -0.6
Or see this region's nucleotide sequence