Experiment: Disodium Glutarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS31805 and RR42_RS31810 are separated by 341 nucleotides RR42_RS31810 and RR42_RS31815 are separated by 18 nucleotides RR42_RS31815 and RR42_RS31820 are separated by 51 nucleotides RR42_RS31820 and RR42_RS31825 are separated by 56 nucleotides
RR42_RS31805: RR42_RS31805 - hypothetical protein, at 2,514,425 to 2,514,649
_RS31805
RR42_RS31810: RR42_RS31810 - hypothetical protein, at 2,514,991 to 2,515,545
_RS31810
RR42_RS31815: RR42_RS31815 - steroid delta-isomerase, at 2,515,564 to 2,515,953
_RS31815
RR42_RS31820: RR42_RS31820 - short-chain dehydrogenase, at 2,516,005 to 2,516,790
_RS31820
RR42_RS31825: RR42_RS31825 - 3-oxoacyl-ACP reductase, at 2,516,847 to 2,517,695
_RS31825
Position (kb)
2515
2516 Strain fitness (log2 ratio)
-2
-1
0
1 at 2514.701 kb on - strand at 2514.805 kb on - strand at 2514.805 kb on - strand at 2514.805 kb on - strand at 2514.857 kb on - strand at 2514.857 kb on - strand at 2514.913 kb on + strand at 2514.914 kb on - strand at 2514.984 kb on - strand at 2514.992 kb on + strand at 2514.993 kb on - strand at 2515.072 kb on + strand, within RR42_RS31810 at 2515.401 kb on - strand, within RR42_RS31810 at 2515.566 kb on - strand at 2515.686 kb on - strand, within RR42_RS31815 at 2515.778 kb on + strand, within RR42_RS31815 at 2515.778 kb on + strand, within RR42_RS31815 at 2516.079 kb on - strand at 2516.208 kb on + strand, within RR42_RS31820 at 2516.209 kb on - strand, within RR42_RS31820 at 2516.253 kb on - strand, within RR42_RS31820 at 2516.339 kb on + strand, within RR42_RS31820 at 2516.784 kb on - strand at 2516.902 kb on + strand at 2516.902 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Disodium Glutarate (C) remove 2,514,701 - -0.6 2,514,805 - -0.3 2,514,805 - -0.8 2,514,805 - -0.5 2,514,857 - +1.0 2,514,857 - -1.2 2,514,913 + +1.0 2,514,914 - +0.1 2,514,984 - +1.0 2,514,992 + +0.6 2,514,993 - +0.4 2,515,072 + RR42_RS31810 0.15 -2.2 2,515,401 - RR42_RS31810 0.74 +0.4 2,515,566 - +0.0 2,515,686 - RR42_RS31815 0.31 -0.3 2,515,778 + RR42_RS31815 0.55 -0.8 2,515,778 + RR42_RS31815 0.55 -0.3 2,516,079 - +0.1 2,516,208 + RR42_RS31820 0.26 -0.2 2,516,209 - RR42_RS31820 0.26 +0.2 2,516,253 - RR42_RS31820 0.32 +0.6 2,516,339 + RR42_RS31820 0.42 +0.1 2,516,784 - -1.3 2,516,902 + +0.7 2,516,902 + -0.8
Or see this region's nucleotide sequence