Experiment: Disodium Glutarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS16215 and RR42_RS16220 overlap by 4 nucleotides RR42_RS16220 and RR42_RS16225 are separated by 105 nucleotides RR42_RS16225 and RR42_RS16230 are separated by 138 nucleotides
RR42_RS16215: RR42_RS16215 - hypothetical protein, at 3,510,862 to 3,511,455
_RS16215
RR42_RS16220: RR42_RS16220 - DNA polymerase III subunit chi, at 3,511,452 to 3,511,922
_RS16220
RR42_RS16225: RR42_RS16225 - cytosol aminopeptidase, at 3,512,028 to 3,513,596
_RS16225
RR42_RS16230: RR42_RS16230 - permease, at 3,513,735 to 3,514,859
_RS16230
Position (kb) 3512
3513
3514 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 3511.137 kb on - strand, within RR42_RS16215 at 3511.849 kb on + strand, within RR42_RS16220 at 3511.953 kb on - strand at 3512.143 kb on + strand at 3512.143 kb on + strand at 3512.143 kb on + strand at 3512.143 kb on + strand at 3512.155 kb on + strand at 3512.248 kb on + strand, within RR42_RS16225 at 3512.249 kb on - strand, within RR42_RS16225 at 3512.431 kb on + strand, within RR42_RS16225 at 3512.431 kb on + strand, within RR42_RS16225 at 3512.432 kb on - strand, within RR42_RS16225 at 3512.432 kb on - strand, within RR42_RS16225 at 3512.432 kb on - strand, within RR42_RS16225 at 3512.432 kb on - strand, within RR42_RS16225 at 3512.650 kb on + strand, within RR42_RS16225 at 3512.650 kb on + strand, within RR42_RS16225 at 3512.651 kb on - strand, within RR42_RS16225 at 3512.651 kb on - strand, within RR42_RS16225 at 3512.762 kb on - strand, within RR42_RS16225 at 3512.912 kb on - strand, within RR42_RS16225 at 3512.927 kb on + strand, within RR42_RS16225 at 3512.927 kb on + strand, within RR42_RS16225 at 3512.927 kb on + strand, within RR42_RS16225 at 3512.927 kb on + strand, within RR42_RS16225 at 3512.927 kb on + strand, within RR42_RS16225 at 3513.035 kb on + strand, within RR42_RS16225 at 3513.035 kb on + strand, within RR42_RS16225 at 3513.176 kb on + strand, within RR42_RS16225 at 3513.587 kb on + strand at 3513.636 kb on + strand at 3513.636 kb on + strand at 3513.667 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Disodium Glutarate (C) remove 3,511,137 - RR42_RS16215 0.46 +0.2 3,511,849 + RR42_RS16220 0.84 -1.2 3,511,953 - +0.1 3,512,143 + -0.1 3,512,143 + +0.4 3,512,143 + +1.0 3,512,143 + +0.2 3,512,155 + +0.2 3,512,248 + RR42_RS16225 0.14 +1.1 3,512,249 - RR42_RS16225 0.14 +0.0 3,512,431 + RR42_RS16225 0.26 +0.2 3,512,431 + RR42_RS16225 0.26 -0.3 3,512,432 - RR42_RS16225 0.26 +0.7 3,512,432 - RR42_RS16225 0.26 +0.2 3,512,432 - RR42_RS16225 0.26 +1.3 3,512,432 - RR42_RS16225 0.26 +1.2 3,512,650 + RR42_RS16225 0.40 +0.2 3,512,650 + RR42_RS16225 0.40 -0.1 3,512,651 - RR42_RS16225 0.40 +0.6 3,512,651 - RR42_RS16225 0.40 +1.0 3,512,762 - RR42_RS16225 0.47 +0.7 3,512,912 - RR42_RS16225 0.56 -1.6 3,512,927 + RR42_RS16225 0.57 +0.0 3,512,927 + RR42_RS16225 0.57 +0.6 3,512,927 + RR42_RS16225 0.57 +4.1 3,512,927 + RR42_RS16225 0.57 +0.2 3,512,927 + RR42_RS16225 0.57 +0.2 3,513,035 + RR42_RS16225 0.64 -1.0 3,513,035 + RR42_RS16225 0.64 +0.1 3,513,176 + RR42_RS16225 0.73 +1.5 3,513,587 + -0.5 3,513,636 + -0.2 3,513,636 + +1.0 3,513,667 + -0.3
Or see this region's nucleotide sequence