Experiment: Disodium Glutarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00060 and RR42_RS00065 are separated by 309 nucleotides RR42_RS00065 and RR42_RS00070 are separated by 402 nucleotides
RR42_RS00060: RR42_RS00060 - hypothetical protein, at 21,323 to 22,687
_RS00060
RR42_RS00065: RR42_RS00065 - hypothetical protein, at 22,997 to 24,085
_RS00065
RR42_RS00070: RR42_RS00070 - hypothetical protein, at 24,488 to 27,460
_RS00070
Position (kb) 22
23
24
25 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 22.032 kb on - strand, within RR42_RS00060 at 22.032 kb on - strand, within RR42_RS00060 at 22.032 kb on - strand, within RR42_RS00060 at 22.032 kb on - strand, within RR42_RS00060 at 22.082 kb on + strand, within RR42_RS00060 at 22.083 kb on - strand, within RR42_RS00060 at 22.083 kb on - strand, within RR42_RS00060 at 22.117 kb on - strand, within RR42_RS00060 at 22.184 kb on + strand, within RR42_RS00060 at 22.184 kb on + strand, within RR42_RS00060 at 22.185 kb on - strand, within RR42_RS00060 at 22.191 kb on - strand, within RR42_RS00060 at 22.254 kb on + strand, within RR42_RS00060 at 22.255 kb on - strand, within RR42_RS00060 at 22.282 kb on - strand, within RR42_RS00060 at 22.535 kb on - strand, within RR42_RS00060 at 22.535 kb on - strand, within RR42_RS00060 at 22.567 kb on + strand at 22.568 kb on - strand at 22.568 kb on - strand at 22.677 kb on + strand at 22.677 kb on + strand at 22.678 kb on - strand at 22.678 kb on - strand at 22.678 kb on - strand at 22.690 kb on + strand at 22.690 kb on + strand at 22.690 kb on + strand at 22.750 kb on + strand at 22.750 kb on + strand at 22.760 kb on - strand at 22.782 kb on - strand at 22.801 kb on - strand at 22.801 kb on - strand at 22.801 kb on - strand at 22.801 kb on - strand at 22.801 kb on - strand at 22.984 kb on + strand at 22.985 kb on - strand at 22.985 kb on - strand at 23.003 kb on + strand at 23.004 kb on - strand at 23.011 kb on + strand at 23.012 kb on - strand at 23.083 kb on + strand at 23.190 kb on + strand, within RR42_RS00065 at 23.190 kb on + strand, within RR42_RS00065 at 23.285 kb on + strand, within RR42_RS00065 at 23.376 kb on + strand, within RR42_RS00065 at 23.376 kb on + strand, within RR42_RS00065 at 23.879 kb on + strand, within RR42_RS00065 at 23.880 kb on - strand, within RR42_RS00065 at 23.880 kb on - strand, within RR42_RS00065 at 23.989 kb on + strand at 24.020 kb on + strand at 24.020 kb on + strand at 24.051 kb on + strand at 24.051 kb on + strand at 24.058 kb on + strand at 24.058 kb on + strand at 24.104 kb on + strand at 24.104 kb on + strand at 24.104 kb on + strand at 24.105 kb on - strand at 24.105 kb on - strand at 24.105 kb on - strand at 24.179 kb on + strand at 24.197 kb on + strand at 24.197 kb on + strand at 24.625 kb on + strand at 24.626 kb on - strand at 24.726 kb on + strand at 24.896 kb on + strand, within RR42_RS00070 at 24.980 kb on - strand, within RR42_RS00070
Per-strain Table
Position Strand Gene LocusTag Fraction Disodium Glutarate (C) remove 22,032 - RR42_RS00060 0.52 +1.3 22,032 - RR42_RS00060 0.52 -0.5 22,032 - RR42_RS00060 0.52 +0.1 22,032 - RR42_RS00060 0.52 -0.9 22,082 + RR42_RS00060 0.56 -0.9 22,083 - RR42_RS00060 0.56 -0.5 22,083 - RR42_RS00060 0.56 -1.8 22,117 - RR42_RS00060 0.58 -0.4 22,184 + RR42_RS00060 0.63 -0.5 22,184 + RR42_RS00060 0.63 +0.4 22,185 - RR42_RS00060 0.63 +0.4 22,191 - RR42_RS00060 0.64 -0.8 22,254 + RR42_RS00060 0.68 -0.4 22,255 - RR42_RS00060 0.68 -0.1 22,282 - RR42_RS00060 0.70 -1.5 22,535 - RR42_RS00060 0.89 +0.4 22,535 - RR42_RS00060 0.89 +0.3 22,567 + -0.1 22,568 - -0.1 22,568 - +0.5 22,677 + -0.5 22,677 + -1.3 22,678 - -1.9 22,678 - +1.1 22,678 - -0.2 22,690 + +0.3 22,690 + +0.3 22,690 + -1.5 22,750 + +0.3 22,750 + +0.8 22,760 - -0.3 22,782 - -0.4 22,801 - +0.1 22,801 - -0.4 22,801 - +0.4 22,801 - -0.2 22,801 - +0.0 22,984 + +1.2 22,985 - +0.0 22,985 - +0.5 23,003 + +0.5 23,004 - -2.7 23,011 + +0.2 23,012 - -0.2 23,083 + -1.1 23,190 + RR42_RS00065 0.18 -1.7 23,190 + RR42_RS00065 0.18 -0.4 23,285 + RR42_RS00065 0.26 -0.2 23,376 + RR42_RS00065 0.35 -0.8 23,376 + RR42_RS00065 0.35 -1.8 23,879 + RR42_RS00065 0.81 -0.3 23,880 - RR42_RS00065 0.81 -0.3 23,880 - RR42_RS00065 0.81 -1.3 23,989 + +0.3 24,020 + -0.5 24,020 + +0.2 24,051 + -0.5 24,051 + +1.5 24,058 + -0.1 24,058 + +1.7 24,104 + -0.3 24,104 + +0.4 24,104 + +1.5 24,105 - +0.6 24,105 - -1.3 24,105 - -0.1 24,179 + -0.5 24,197 + +3.3 24,197 + -0.2 24,625 + -0.8 24,626 - -1.1 24,726 + -0.1 24,896 + RR42_RS00070 0.14 -1.3 24,980 - RR42_RS00070 0.17 +1.5
Or see this region's nucleotide sequence