Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 83.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22715 and BWI76_RS22720 overlap by 1 nucleotides BWI76_RS22720 and BWI76_RS22725 overlap by 4 nucleotides BWI76_RS22725 and BWI76_RS22730 overlap by 19 nucleotides
BWI76_RS22715: BWI76_RS22715 - type I-E CRISPR-associated endoribonuclease Cas2, at 4,734,507 to 4,734,800
_RS22715
BWI76_RS22720: BWI76_RS22720 - subtype I-E CRISPR-associated endonuclease Cas1, at 4,734,800 to 4,735,720
_RS22720
BWI76_RS22725: BWI76_RS22725 - type I-E CRISPR-associated protein Cas6/Cse3/CasE, at 4,735,717 to 4,736,367
_RS22725
BWI76_RS22730: BWI76_RS22730 - type I-E CRISPR-associated protein Cas5/CasD, at 4,736,349 to 4,737,095
_RS22730
Position (kb) 4734
4735
4736 Strain fitness (log2 ratio) -1
0
1
2 at 4733.939 kb on + strand at 4733.976 kb on + strand at 4734.083 kb on + strand at 4734.254 kb on + strand at 4734.286 kb on + strand at 4734.286 kb on + strand at 4734.315 kb on - strand at 4734.467 kb on + strand at 4734.565 kb on - strand, within BWI76_RS22715 at 4734.565 kb on - strand, within BWI76_RS22715 at 4734.619 kb on + strand, within BWI76_RS22715 at 4734.632 kb on - strand, within BWI76_RS22715 at 4734.632 kb on - strand, within BWI76_RS22715 at 4734.632 kb on - strand, within BWI76_RS22715 at 4734.876 kb on + strand at 4734.876 kb on + strand at 4734.886 kb on + strand at 4734.943 kb on + strand, within BWI76_RS22720 at 4734.943 kb on + strand, within BWI76_RS22720 at 4734.943 kb on + strand, within BWI76_RS22720 at 4734.951 kb on - strand, within BWI76_RS22720 at 4734.951 kb on - strand, within BWI76_RS22720 at 4734.951 kb on - strand, within BWI76_RS22720 at 4734.951 kb on - strand, within BWI76_RS22720 at 4735.143 kb on + strand, within BWI76_RS22720 at 4735.170 kb on - strand, within BWI76_RS22720 at 4735.189 kb on + strand, within BWI76_RS22720 at 4735.214 kb on + strand, within BWI76_RS22720 at 4735.243 kb on + strand, within BWI76_RS22720 at 4735.251 kb on - strand, within BWI76_RS22720 at 4735.263 kb on + strand, within BWI76_RS22720 at 4735.297 kb on + strand, within BWI76_RS22720 at 4735.297 kb on + strand, within BWI76_RS22720 at 4735.305 kb on - strand, within BWI76_RS22720 at 4735.305 kb on - strand, within BWI76_RS22720 at 4735.305 kb on - strand, within BWI76_RS22720 at 4735.335 kb on + strand, within BWI76_RS22720 at 4735.708 kb on + strand at 4735.708 kb on + strand at 4735.751 kb on - strand at 4735.751 kb on - strand at 4735.808 kb on - strand, within BWI76_RS22725 at 4735.847 kb on + strand, within BWI76_RS22725 at 4735.855 kb on - strand, within BWI76_RS22725 at 4735.865 kb on - strand, within BWI76_RS22725 at 4735.958 kb on + strand, within BWI76_RS22725 at 4736.003 kb on + strand, within BWI76_RS22725 at 4736.099 kb on - strand, within BWI76_RS22725 at 4736.099 kb on - strand, within BWI76_RS22725 at 4736.104 kb on + strand, within BWI76_RS22725 at 4736.104 kb on + strand, within BWI76_RS22725 at 4736.183 kb on - strand, within BWI76_RS22725 at 4736.187 kb on + strand, within BWI76_RS22725 at 4736.207 kb on + strand, within BWI76_RS22725 at 4736.329 kb on - strand at 4736.362 kb on + strand at 4736.370 kb on - strand at 4736.462 kb on - strand, within BWI76_RS22730 at 4736.463 kb on - strand, within BWI76_RS22730 at 4736.574 kb on + strand, within BWI76_RS22730 at 4736.680 kb on - strand, within BWI76_RS22730
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 83.25 mM remove 4,733,939 + +0.3 4,733,976 + +0.2 4,734,083 + +1.1 4,734,254 + -0.4 4,734,286 + +1.2 4,734,286 + -0.7 4,734,315 - -1.4 4,734,467 + +0.5 4,734,565 - BWI76_RS22715 0.20 +0.0 4,734,565 - BWI76_RS22715 0.20 -0.8 4,734,619 + BWI76_RS22715 0.38 -0.3 4,734,632 - BWI76_RS22715 0.43 -0.4 4,734,632 - BWI76_RS22715 0.43 +0.6 4,734,632 - BWI76_RS22715 0.43 -0.0 4,734,876 + +0.6 4,734,876 + -0.2 4,734,886 + +0.6 4,734,943 + BWI76_RS22720 0.16 +0.2 4,734,943 + BWI76_RS22720 0.16 +0.2 4,734,943 + BWI76_RS22720 0.16 +0.4 4,734,951 - BWI76_RS22720 0.16 +0.9 4,734,951 - BWI76_RS22720 0.16 +0.4 4,734,951 - BWI76_RS22720 0.16 +0.8 4,734,951 - BWI76_RS22720 0.16 +1.0 4,735,143 + BWI76_RS22720 0.37 +1.2 4,735,170 - BWI76_RS22720 0.40 +0.8 4,735,189 + BWI76_RS22720 0.42 +0.4 4,735,214 + BWI76_RS22720 0.45 +0.1 4,735,243 + BWI76_RS22720 0.48 -0.2 4,735,251 - BWI76_RS22720 0.49 -0.1 4,735,263 + BWI76_RS22720 0.50 +0.2 4,735,297 + BWI76_RS22720 0.54 +0.4 4,735,297 + BWI76_RS22720 0.54 +0.6 4,735,305 - BWI76_RS22720 0.55 +2.0 4,735,305 - BWI76_RS22720 0.55 +0.7 4,735,305 - BWI76_RS22720 0.55 -1.0 4,735,335 + BWI76_RS22720 0.58 +1.0 4,735,708 + +0.5 4,735,708 + -0.4 4,735,751 - -0.2 4,735,751 - +0.7 4,735,808 - BWI76_RS22725 0.14 +0.3 4,735,847 + BWI76_RS22725 0.20 -0.1 4,735,855 - BWI76_RS22725 0.21 -0.8 4,735,865 - BWI76_RS22725 0.23 +0.4 4,735,958 + BWI76_RS22725 0.37 -0.1 4,736,003 + BWI76_RS22725 0.44 -0.2 4,736,099 - BWI76_RS22725 0.59 +0.0 4,736,099 - BWI76_RS22725 0.59 -0.2 4,736,104 + BWI76_RS22725 0.59 -0.4 4,736,104 + BWI76_RS22725 0.59 +0.3 4,736,183 - BWI76_RS22725 0.72 -0.1 4,736,187 + BWI76_RS22725 0.72 -0.2 4,736,207 + BWI76_RS22725 0.75 -0.6 4,736,329 - +0.3 4,736,362 + -1.0 4,736,370 - +0.1 4,736,462 - BWI76_RS22730 0.15 +0.1 4,736,463 - BWI76_RS22730 0.15 +0.7 4,736,574 + BWI76_RS22730 0.30 +0.2 4,736,680 - BWI76_RS22730 0.44 -0.4
Or see this region's nucleotide sequence