Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 83.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19690 and BWI76_RS19695 are separated by 173 nucleotides BWI76_RS19695 and BWI76_RS19700 are separated by 95 nucleotides BWI76_RS19700 and BWI76_RS19705 are separated by 1 nucleotides
BWI76_RS19690: BWI76_RS19690 - LysR family transcriptional regulator, at 4,115,262 to 4,116,128
_RS19690
BWI76_RS19695: BWI76_RS19695 - membrane protein, at 4,116,302 to 4,117,351
_RS19695
BWI76_RS19700: BWI76_RS19700 - deoxyribonuclease IV, at 4,117,447 to 4,118,304
_RS19700
BWI76_RS19705: BWI76_RS19705 - kinase, at 4,118,306 to 4,119,394
_RS19705
Position (kb)
4116
4117
4118 Strain fitness (log2 ratio)
-1
0
1 at 4115.558 kb on - strand, within BWI76_RS19690 at 4116.025 kb on - strand, within BWI76_RS19690 at 4116.174 kb on - strand at 4117.220 kb on + strand, within BWI76_RS19695 at 4118.021 kb on + strand, within BWI76_RS19700 at 4118.029 kb on - strand, within BWI76_RS19700 at 4118.087 kb on + strand, within BWI76_RS19700 at 4118.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 83.25 mM remove 4,115,558 - BWI76_RS19690 0.34 -0.6 4,116,025 - BWI76_RS19690 0.88 +0.6 4,116,174 - +0.7 4,117,220 + BWI76_RS19695 0.87 +0.7 4,118,021 + BWI76_RS19700 0.67 +0.6 4,118,029 - BWI76_RS19700 0.68 -1.6 4,118,087 + BWI76_RS19700 0.75 -0.0 4,118,324 - +0.8
Or see this region's nucleotide sequence