Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 83.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02720 and BWI76_RS02725 are separated by 84 nucleotides BWI76_RS02725 and BWI76_RS02730 are separated by 52 nucleotides
BWI76_RS02720: BWI76_RS02720 - NAD(P)-dependent oxidoreductase, at 551,086 to 551,934
_RS02720
BWI76_RS02725: BWI76_RS02725 - HxlR family transcriptional regulator, at 552,019 to 552,402
_RS02725
BWI76_RS02730: BWI76_RS02730 - 2',3'-cyclic-nucleotide 2'-phosphodiesterase, at 552,455 to 554,398
_RS02730
Position (kb) 552
553 Strain fitness (log2 ratio) -2
-1
0
1 at 551.229 kb on + strand, within BWI76_RS02720 at 551.237 kb on - strand, within BWI76_RS02720 at 551.237 kb on - strand, within BWI76_RS02720 at 551.318 kb on - strand, within BWI76_RS02720 at 551.341 kb on - strand, within BWI76_RS02720 at 551.543 kb on - strand, within BWI76_RS02720 at 551.604 kb on - strand, within BWI76_RS02720 at 551.666 kb on + strand, within BWI76_RS02720 at 551.854 kb on - strand at 551.901 kb on - strand at 551.937 kb on + strand at 552.264 kb on - strand, within BWI76_RS02725 at 552.409 kb on + strand at 552.437 kb on - strand at 552.688 kb on + strand, within BWI76_RS02730 at 553.210 kb on + strand, within BWI76_RS02730 at 553.225 kb on + strand, within BWI76_RS02730
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 83.25 mM remove 551,229 + BWI76_RS02720 0.17 +0.5 551,237 - BWI76_RS02720 0.18 +0.3 551,237 - BWI76_RS02720 0.18 -0.6 551,318 - BWI76_RS02720 0.27 +0.5 551,341 - BWI76_RS02720 0.30 -0.1 551,543 - BWI76_RS02720 0.54 -0.1 551,604 - BWI76_RS02720 0.61 -0.4 551,666 + BWI76_RS02720 0.68 -0.0 551,854 - -1.0 551,901 - +0.1 551,937 + -0.5 552,264 - BWI76_RS02725 0.64 -1.9 552,409 + +0.4 552,437 - -0.4 552,688 + BWI76_RS02730 0.12 -1.0 553,210 + BWI76_RS02730 0.39 +0.6 553,225 + BWI76_RS02730 0.40 +0.1
Or see this region's nucleotide sequence