Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2851

Experiment: MoYLS4 with Uranyl Acetate 1mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntstfE and DVU2850 overlap by 8 nucleotidesDVU2850 and DVU2851 are separated by 8 nucleotidesDVU2851 and DVU2852 are separated by 8 nucleotidesDVU2852 and DVU2853 are separated by 1 nucleotides DVU2849: stfE - tail fiber protein, putative (TIGR), at 2,950,331 to 2,951,146 stfE DVU2850: DVU2850 - tail protein, putative (TIGR), at 2,951,139 to 2,951,765 DVU2850 DVU2851: DVU2851 - tail protein, putative (TIGR), at 2,951,774 to 2,952,835 DVU2851 DVU2852: DVU2852 - tail protein, putative (TIGR), at 2,952,844 to 2,953,320 DVU2852 DVU2853: DVU2853 - phage baseplate assembly protein V, putative (TIGR), at 2,953,322 to 2,953,960 DVU2853 Position (kb) 2951 2952 2953Strain fitness (log2 ratio) -2 -1 0 1 2at 2951.019 kb on + strand, within stfEat 2951.034 kb on - strand, within stfEat 2951.040 kb on + strand, within stfEat 2951.416 kb on + strand, within DVU2850at 2951.443 kb on + strand, within DVU2850at 2951.472 kb on + strand, within DVU2850at 2951.652 kb on - strand, within DVU2850at 2951.779 kb on - strandat 2951.779 kb on - strandat 2951.846 kb on + strandat 2952.191 kb on - strand, within DVU2851at 2952.191 kb on - strand, within DVU2851at 2952.359 kb on + strand, within DVU2851at 2952.540 kb on + strand, within DVU2851at 2952.540 kb on + strand, within DVU2851at 2952.543 kb on - strand, within DVU2851at 2952.543 kb on - strand, within DVU2851at 2952.548 kb on - strand, within DVU2851at 2952.603 kb on + strand, within DVU2851at 2952.900 kb on + strand, within DVU2852at 2952.972 kb on + strand, within DVU2852at 2952.972 kb on + strand, within DVU2852at 2952.980 kb on - strand, within DVU2852at 2953.222 kb on + strand, within DVU2852at 2953.270 kb on - strand, within DVU2852at 2953.499 kb on - strand, within DVU2853at 2953.505 kb on + strand, within DVU2853at 2953.646 kb on + strand, within DVU2853at 2953.655 kb on - strand, within DVU2853at 2953.655 kb on - strand, within DVU2853

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Uranyl Acetate 1mM
remove
2,951,019 + stfE DVU2849 0.84 +0.4
2,951,034 - stfE DVU2849 0.86 -0.3
2,951,040 + stfE DVU2849 0.87 -0.2
2,951,416 + DVU2850 0.44 +0.8
2,951,443 + DVU2850 0.48 -0.7
2,951,472 + DVU2850 0.53 -0.9
2,951,652 - DVU2850 0.82 +0.2
2,951,779 - -0.6
2,951,779 - -0.3
2,951,846 + -2.2
2,952,191 - DVU2851 0.39 +1.8
2,952,191 - DVU2851 0.39 -2.3
2,952,359 + DVU2851 0.55 -0.2
2,952,540 + DVU2851 0.72 -1.8
2,952,540 + DVU2851 0.72 -0.6
2,952,543 - DVU2851 0.72 -0.2
2,952,543 - DVU2851 0.72 -2.5
2,952,548 - DVU2851 0.73 -1.0
2,952,603 + DVU2851 0.78 -1.0
2,952,900 + DVU2852 0.12 -0.7
2,952,972 + DVU2852 0.27 -0.2
2,952,972 + DVU2852 0.27 +0.2
2,952,980 - DVU2852 0.29 -0.2
2,953,222 + DVU2852 0.79 -1.1
2,953,270 - DVU2852 0.89 -0.1
2,953,499 - DVU2853 0.28 -0.3
2,953,505 + DVU2853 0.29 -0.4
2,953,646 + DVU2853 0.51 -0.1
2,953,655 - DVU2853 0.52 +0.8
2,953,655 - DVU2853 0.52 -0.6

Or see this region's nucleotide sequence