Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21940

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21935 and RR42_RS21940 are separated by 164 nucleotidesRR42_RS21940 and RR42_RS21945 are separated by 290 nucleotides RR42_RS21935: RR42_RS21935 - 4-hydroxybenzoate transporter, at 246,261 to 247,601 _RS21935 RR42_RS21940: RR42_RS21940 - 4-hydroxybenzoate 3-monooxygenase (EC 1.14.13.2) (from data), at 247,766 to 248,935 _RS21940 RR42_RS21945: RR42_RS21945 - hypothetical protein, at 249,226 to 249,516 _RS21945 Position (kb) 247 248 249Strain fitness (log2 ratio) -2 -1 0 1 2at 246.799 kb on + strand, within RR42_RS21935at 246.799 kb on + strand, within RR42_RS21935at 246.823 kb on + strand, within RR42_RS21935at 246.823 kb on + strand, within RR42_RS21935at 246.823 kb on + strand, within RR42_RS21935at 246.823 kb on + strand, within RR42_RS21935at 246.824 kb on - strand, within RR42_RS21935at 246.824 kb on - strand, within RR42_RS21935at 246.939 kb on + strand, within RR42_RS21935at 246.939 kb on + strand, within RR42_RS21935at 246.940 kb on - strand, within RR42_RS21935at 247.096 kb on + strand, within RR42_RS21935at 247.148 kb on + strand, within RR42_RS21935at 247.149 kb on - strand, within RR42_RS21935at 247.201 kb on + strand, within RR42_RS21935at 247.484 kb on + strandat 247.684 kb on + strandat 247.771 kb on - strandat 247.786 kb on - strandat 247.786 kb on - strandat 247.786 kb on - strandat 247.956 kb on + strand, within RR42_RS21940at 247.957 kb on - strand, within RR42_RS21940at 248.016 kb on + strand, within RR42_RS21940at 248.016 kb on + strand, within RR42_RS21940at 248.017 kb on - strand, within RR42_RS21940at 248.017 kb on - strand, within RR42_RS21940at 248.192 kb on - strand, within RR42_RS21940at 248.194 kb on + strand, within RR42_RS21940at 248.274 kb on + strand, within RR42_RS21940at 248.277 kb on + strand, within RR42_RS21940at 248.277 kb on + strand, within RR42_RS21940at 248.278 kb on - strand, within RR42_RS21940at 248.337 kb on + strand, within RR42_RS21940at 248.337 kb on + strand, within RR42_RS21940at 248.338 kb on - strand, within RR42_RS21940at 248.338 kb on - strand, within RR42_RS21940at 248.397 kb on + strand, within RR42_RS21940at 248.497 kb on - strand, within RR42_RS21940at 248.574 kb on + strand, within RR42_RS21940at 248.575 kb on - strand, within RR42_RS21940at 248.640 kb on + strand, within RR42_RS21940at 248.701 kb on - strand, within RR42_RS21940at 248.701 kb on - strand, within RR42_RS21940at 248.823 kb on + strandat 248.824 kb on - strandat 248.824 kb on - strandat 248.885 kb on + strandat 248.968 kb on - strandat 248.977 kb on - strandat 248.989 kb on + strandat 248.989 kb on + strandat 248.989 kb on + strandat 248.990 kb on - strandat 248.995 kb on + strandat 249.379 kb on + strand, within RR42_RS21945at 249.380 kb on - strand, within RR42_RS21945at 249.512 kb on + strandat 249.512 kb on + strandat 249.512 kb on + strandat 249.513 kb on - strandat 249.513 kb on - strandat 249.598 kb on + strandat 249.855 kb on + strandat 249.855 kb on + strandat 249.856 kb on - strandat 249.924 kb on + strandat 249.924 kb on + strandat 249.924 kb on + strandat 249.925 kb on - strandat 249.925 kb on - strandat 249.925 kb on - strandat 249.925 kb on - strandat 249.925 kb on - strandat 249.925 kb on - strandat 249.925 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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246,799 + RR42_RS21935 0.40 -0.1
246,799 + RR42_RS21935 0.40 +0.0
246,823 + RR42_RS21935 0.42 -0.5
246,823 + RR42_RS21935 0.42 +0.7
246,823 + RR42_RS21935 0.42 -0.1
246,823 + RR42_RS21935 0.42 +2.5
246,824 - RR42_RS21935 0.42 -1.5
246,824 - RR42_RS21935 0.42 -0.3
246,939 + RR42_RS21935 0.51 -0.3
246,939 + RR42_RS21935 0.51 +0.8
246,940 - RR42_RS21935 0.51 -0.4
247,096 + RR42_RS21935 0.62 -0.2
247,148 + RR42_RS21935 0.66 +0.5
247,149 - RR42_RS21935 0.66 -0.9
247,201 + RR42_RS21935 0.70 -0.2
247,484 + -0.2
247,684 + -0.1
247,771 - -0.0
247,786 - -0.2
247,786 - -0.2
247,786 - +1.0
247,956 + RR42_RS21940 0.16 -1.9
247,957 - RR42_RS21940 0.16 -1.0
248,016 + RR42_RS21940 0.21 -1.5
248,016 + RR42_RS21940 0.21 -0.7
248,017 - RR42_RS21940 0.21 -0.4
248,017 - RR42_RS21940 0.21 +0.9
248,192 - RR42_RS21940 0.36 -0.4
248,194 + RR42_RS21940 0.37 +0.2
248,274 + RR42_RS21940 0.43 -0.5
248,277 + RR42_RS21940 0.44 +1.5
248,277 + RR42_RS21940 0.44 +0.3
248,278 - RR42_RS21940 0.44 -0.1
248,337 + RR42_RS21940 0.49 -1.1
248,337 + RR42_RS21940 0.49 +1.0
248,338 - RR42_RS21940 0.49 -0.2
248,338 - RR42_RS21940 0.49 -0.8
248,397 + RR42_RS21940 0.54 +0.5
248,497 - RR42_RS21940 0.62 +0.4
248,574 + RR42_RS21940 0.69 -0.4
248,575 - RR42_RS21940 0.69 +0.1
248,640 + RR42_RS21940 0.75 -0.3
248,701 - RR42_RS21940 0.80 -1.4
248,701 - RR42_RS21940 0.80 -0.2
248,823 + +1.5
248,824 - +0.7
248,824 - -1.9
248,885 + +0.8
248,968 - +0.1
248,977 - -0.1
248,989 + -0.4
248,989 + -0.1
248,989 + -1.6
248,990 - +0.9
248,995 + -0.0
249,379 + RR42_RS21945 0.53 -0.5
249,380 - RR42_RS21945 0.53 -0.5
249,512 + +0.6
249,512 + +0.6
249,512 + +0.0
249,513 - -0.4
249,513 - -0.4
249,598 + -0.7
249,855 + -1.0
249,855 + +0.1
249,856 - -0.5
249,924 + +0.5
249,924 + +0.5
249,924 + +0.0
249,925 - -0.7
249,925 - +0.1
249,925 - +0.7
249,925 - -0.3
249,925 - -0.0
249,925 - -0.1
249,925 - +0.2

Or see this region's nucleotide sequence