Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20565 and RR42_RS20570 are separated by 6 nucleotides RR42_RS20570 and RR42_RS20575 overlap by 4 nucleotides RR42_RS20575 and RR42_RS20580 are separated by 129 nucleotides RR42_RS20580 and RR42_RS20585 are separated by 14 nucleotides
RR42_RS20565: RR42_RS20565 - hypothetical protein, at 4,461,383 to 4,465,420
_RS20565
RR42_RS20570: RR42_RS20570 - biopolymer transporter ExbD, at 4,465,427 to 4,465,936
_RS20570
RR42_RS20575: RR42_RS20575 - hypothetical protein, at 4,465,933 to 4,466,253
_RS20575
RR42_RS20580: RR42_RS20580 - lipoprotein, at 4,466,383 to 4,467,204
_RS20580
RR42_RS20585: RR42_RS20585 - pyridine nucleotide-disulfide oxidoreductase, at 4,467,219 to 4,468,670
_RS20585
Position (kb) 4465
4466
4467 Strain fitness (log2 ratio) -2
-1
0
1 at 4465.435 kb on + strand at 4465.435 kb on + strand at 4465.457 kb on + strand at 4465.458 kb on - strand at 4465.458 kb on - strand at 4465.517 kb on + strand, within RR42_RS20570 at 4465.596 kb on - strand, within RR42_RS20570 at 4466.058 kb on + strand, within RR42_RS20575 at 4466.197 kb on + strand, within RR42_RS20575 at 4466.224 kb on + strand at 4466.224 kb on + strand at 4466.224 kb on + strand at 4466.224 kb on + strand at 4466.225 kb on - strand at 4466.225 kb on - strand at 4466.225 kb on - strand at 4466.251 kb on + strand at 4466.262 kb on - strand at 4466.264 kb on + strand at 4466.264 kb on + strand at 4466.265 kb on - strand at 4466.296 kb on + strand at 4466.297 kb on - strand at 4466.300 kb on + strand at 4466.467 kb on + strand, within RR42_RS20580 at 4466.467 kb on + strand, within RR42_RS20580 at 4466.467 kb on + strand, within RR42_RS20580 at 4466.467 kb on + strand, within RR42_RS20580 at 4466.468 kb on - strand, within RR42_RS20580 at 4466.468 kb on - strand, within RR42_RS20580 at 4466.641 kb on + strand, within RR42_RS20580 at 4466.641 kb on + strand, within RR42_RS20580 at 4466.687 kb on - strand, within RR42_RS20580 at 4466.716 kb on + strand, within RR42_RS20580 at 4467.071 kb on - strand, within RR42_RS20580 at 4467.071 kb on - strand, within RR42_RS20580 at 4467.118 kb on + strand, within RR42_RS20580 at 4467.119 kb on - strand, within RR42_RS20580
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 4,465,435 + -0.3 4,465,435 + -1.6 4,465,457 + +0.3 4,465,458 - -0.2 4,465,458 - -0.3 4,465,517 + RR42_RS20570 0.18 -2.0 4,465,596 - RR42_RS20570 0.33 +0.3 4,466,058 + RR42_RS20575 0.39 -0.7 4,466,197 + RR42_RS20575 0.82 -0.3 4,466,224 + +0.5 4,466,224 + +0.5 4,466,224 + -0.0 4,466,224 + -0.1 4,466,225 - +0.7 4,466,225 - +1.2 4,466,225 - -0.9 4,466,251 + +1.7 4,466,262 - -0.9 4,466,264 + +0.6 4,466,264 + -1.1 4,466,265 - +0.0 4,466,296 + +1.0 4,466,297 - +0.6 4,466,300 + +0.4 4,466,467 + RR42_RS20580 0.10 -0.7 4,466,467 + RR42_RS20580 0.10 -0.0 4,466,467 + RR42_RS20580 0.10 +0.3 4,466,467 + RR42_RS20580 0.10 +0.9 4,466,468 - RR42_RS20580 0.10 -0.6 4,466,468 - RR42_RS20580 0.10 -0.9 4,466,641 + RR42_RS20580 0.31 +0.4 4,466,641 + RR42_RS20580 0.31 +0.6 4,466,687 - RR42_RS20580 0.37 +0.9 4,466,716 + RR42_RS20580 0.41 -0.4 4,467,071 - RR42_RS20580 0.84 -1.0 4,467,071 - RR42_RS20580 0.84 -0.5 4,467,118 + RR42_RS20580 0.89 +0.2 4,467,119 - RR42_RS20580 0.90 -0.3
Or see this region's nucleotide sequence