Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18915

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS18910 and RR42_RS18915 are separated by 88 nucleotidesRR42_RS18915 and RR42_RS18920 are separated by 33 nucleotidesRR42_RS18920 and RR42_RS18925 are separated by 26 nucleotides RR42_RS18910: RR42_RS18910 - histidinol-phosphate aminotransferase, at 4,094,701 to 4,095,801 _RS18910 RR42_RS18915: RR42_RS18915 - histidinol dehydrogenase, at 4,095,890 to 4,097,227 _RS18915 RR42_RS18920: RR42_RS18920 - ATP phosphoribosyltransferase catalytic subunit, at 4,097,261 to 4,097,923 _RS18920 RR42_RS18925: RR42_RS18925 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 4,097,950 to 4,099,200 _RS18925 Position (kb) 4095 4096 4097 4098Strain fitness (log2 ratio) -2 -1 0 1at 4095.895 kb on + strandat 4095.895 kb on + strandat 4095.896 kb on - strandat 4098.027 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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4,095,895 + -1.5
4,095,895 + -1.8
4,095,896 - -0.6
4,098,027 - -1.4

Or see this region's nucleotide sequence