Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02125 and RR42_RS02130 are separated by 270 nucleotides RR42_RS02130 and RR42_RS02135 are separated by 28 nucleotides RR42_RS02135 and RR42_RS02140 are separated by 111 nucleotides RR42_RS02140 and RR42_RS02145 are separated by 5 nucleotides
RR42_RS02125: RR42_RS02125 - adenine phosphoribosyltransferase, at 471,327 to 471,899
_RS02125
RR42_RS02130: RR42_RS02130 - membrane protein, at 472,170 to 473,855
_RS02130
RR42_RS02135: RR42_RS02135 - membrane protein, at 473,884 to 474,369
_RS02135
RR42_RS02140: RR42_RS02140 - hypothetical protein, at 474,481 to 474,831
_RS02140
RR42_RS02145: RR42_RS02145 - excinuclease ABC subunit A, at 474,837 to 477,701
_RS02145
Position (kb) 472
473
474 Strain fitness (log2 ratio) -2
-1
0
1
2 at 471.178 kb on + strand at 471.178 kb on + strand at 471.178 kb on + strand at 471.178 kb on + strand at 471.179 kb on - strand at 471.336 kb on - strand at 471.336 kb on - strand at 471.336 kb on - strand at 471.336 kb on - strand at 471.375 kb on + strand at 471.376 kb on - strand at 471.502 kb on - strand, within RR42_RS02125 at 471.573 kb on + strand, within RR42_RS02125 at 471.573 kb on + strand, within RR42_RS02125 at 471.657 kb on + strand, within RR42_RS02125 at 471.657 kb on + strand, within RR42_RS02125 at 471.657 kb on + strand, within RR42_RS02125 at 471.658 kb on - strand, within RR42_RS02125 at 472.081 kb on - strand at 472.100 kb on + strand at 472.101 kb on - strand at 472.101 kb on - strand at 472.150 kb on + strand at 472.150 kb on + strand at 472.150 kb on + strand at 472.151 kb on - strand at 472.151 kb on - strand at 472.158 kb on + strand at 472.159 kb on - strand at 472.177 kb on + strand at 472.177 kb on + strand at 472.178 kb on - strand at 472.178 kb on - strand at 472.178 kb on - strand at 472.178 kb on - strand at 472.180 kb on + strand at 472.181 kb on - strand at 472.254 kb on + strand at 472.255 kb on - strand at 472.255 kb on - strand at 472.255 kb on - strand at 472.726 kb on - strand, within RR42_RS02130 at 473.304 kb on + strand, within RR42_RS02130 at 473.305 kb on - strand, within RR42_RS02130 at 473.305 kb on - strand, within RR42_RS02130 at 473.322 kb on + strand, within RR42_RS02130 at 473.322 kb on + strand, within RR42_RS02130 at 473.323 kb on - strand, within RR42_RS02130 at 473.631 kb on + strand, within RR42_RS02130 at 473.632 kb on - strand, within RR42_RS02130 at 473.639 kb on + strand, within RR42_RS02130 at 473.640 kb on - strand, within RR42_RS02130 at 473.754 kb on + strand at 473.784 kb on - strand at 473.865 kb on - strand at 473.885 kb on + strand at 473.885 kb on + strand at 473.885 kb on + strand at 473.887 kb on + strand at 473.887 kb on + strand at 473.887 kb on + strand at 473.887 kb on + strand at 473.888 kb on - strand at 473.888 kb on - strand at 473.888 kb on - strand at 473.888 kb on - strand at 473.895 kb on - strand at 474.010 kb on + strand, within RR42_RS02135 at 474.010 kb on + strand, within RR42_RS02135 at 474.011 kb on - strand, within RR42_RS02135 at 474.011 kb on - strand, within RR42_RS02135 at 474.011 kb on - strand, within RR42_RS02135 at 474.055 kb on + strand, within RR42_RS02135 at 474.056 kb on - strand, within RR42_RS02135 at 474.235 kb on + strand, within RR42_RS02135 at 474.236 kb on - strand, within RR42_RS02135 at 474.355 kb on + strand at 474.355 kb on + strand at 474.356 kb on - strand at 474.438 kb on + strand at 474.438 kb on + strand at 474.438 kb on + strand at 474.438 kb on + strand at 474.438 kb on + strand at 474.439 kb on - strand at 474.439 kb on - strand at 474.439 kb on - strand at 474.439 kb on - strand at 474.439 kb on - strand at 474.443 kb on + strand at 474.444 kb on - strand at 474.483 kb on - strand at 474.611 kb on - strand, within RR42_RS02140 at 474.849 kb on + strand at 474.850 kb on - strand at 474.850 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 471,178 + +0.5 471,178 + +1.5 471,178 + -0.1 471,178 + -0.1 471,179 - +1.5 471,336 - -0.3 471,336 - -0.3 471,336 - -1.1 471,336 - -0.7 471,375 + -0.7 471,376 - -0.6 471,502 - RR42_RS02125 0.31 -0.8 471,573 + RR42_RS02125 0.43 -0.4 471,573 + RR42_RS02125 0.43 -2.3 471,657 + RR42_RS02125 0.58 -1.1 471,657 + RR42_RS02125 0.58 -0.3 471,657 + RR42_RS02125 0.58 +0.2 471,658 - RR42_RS02125 0.58 -0.2 472,081 - -0.7 472,100 + +0.8 472,101 - +0.1 472,101 - +1.5 472,150 + +0.8 472,150 + +1.3 472,150 + -1.2 472,151 - +0.2 472,151 - -0.6 472,158 + -0.3 472,159 - +0.9 472,177 + -0.5 472,177 + +0.9 472,178 - -1.4 472,178 - -1.0 472,178 - -1.3 472,178 - -1.1 472,180 + -0.5 472,181 - -0.2 472,254 + -0.1 472,255 - -0.3 472,255 - +0.3 472,255 - +0.4 472,726 - RR42_RS02130 0.33 +2.2 473,304 + RR42_RS02130 0.67 +0.2 473,305 - RR42_RS02130 0.67 +0.9 473,305 - RR42_RS02130 0.67 -0.8 473,322 + RR42_RS02130 0.68 +0.0 473,322 + RR42_RS02130 0.68 -0.2 473,323 - RR42_RS02130 0.68 +0.5 473,631 + RR42_RS02130 0.87 +0.2 473,632 - RR42_RS02130 0.87 +0.6 473,639 + RR42_RS02130 0.87 -0.7 473,640 - RR42_RS02130 0.87 -1.7 473,754 + +0.0 473,784 - -0.9 473,865 - +0.7 473,885 + -0.2 473,885 + +0.5 473,885 + +0.9 473,887 + -2.2 473,887 + +0.5 473,887 + +0.4 473,887 + +1.0 473,888 - +0.9 473,888 - +1.1 473,888 - -0.1 473,888 - +0.1 473,895 - +1.3 474,010 + RR42_RS02135 0.26 -0.4 474,010 + RR42_RS02135 0.26 -0.3 474,011 - RR42_RS02135 0.26 +1.5 474,011 - RR42_RS02135 0.26 -0.2 474,011 - RR42_RS02135 0.26 +0.6 474,055 + RR42_RS02135 0.35 +0.3 474,056 - RR42_RS02135 0.35 -0.1 474,235 + RR42_RS02135 0.72 -0.9 474,236 - RR42_RS02135 0.72 +0.4 474,355 + -0.3 474,355 + -1.5 474,356 - -0.4 474,438 + +0.1 474,438 + -0.1 474,438 + -0.1 474,438 + -1.0 474,438 + +0.5 474,439 - -0.5 474,439 - +0.5 474,439 - +0.6 474,439 - -0.6 474,439 - +0.6 474,443 + +0.4 474,444 - +0.6 474,483 - -1.1 474,611 - RR42_RS02140 0.37 +1.1 474,849 + -0.5 474,850 - +0.2 474,850 - +0.8
Or see this region's nucleotide sequence