Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00855

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00845 and RR42_RS00850 overlap by 4 nucleotidesRR42_RS00850 and RR42_RS00855 are separated by 532 nucleotidesRR42_RS00855 and RR42_RS00860 are separated by 198 nucleotidesRR42_RS00860 and RR42_RS00865 are separated by 85 nucleotides RR42_RS00845: RR42_RS00845 - metal ABC transporter substrate-binding protein, at 205,900 to 206,736 _RS00845 RR42_RS00850: RR42_RS00850 - hypothetical protein, at 206,733 to 206,993 _RS00850 RR42_RS00855: RR42_RS00855 - Zn-dependent hydrolase, at 207,526 to 208,599 _RS00855 RR42_RS00860: RR42_RS00860 - MerR family transcriptional regulator, at 208,798 to 209,232 _RS00860 RR42_RS00865: RR42_RS00865 - phenylacetic acid degradation protein PaaI, at 209,318 to 209,776 _RS00865 Position (kb) 207 208 209Strain fitness (log2 ratio) -2 -1 0 1 2 3at 206.544 kb on + strand, within RR42_RS00845at 206.544 kb on + strand, within RR42_RS00845at 206.590 kb on + strand, within RR42_RS00845at 206.707 kb on + strandat 206.707 kb on + strandat 206.707 kb on + strandat 206.708 kb on - strandat 206.708 kb on - strandat 206.708 kb on - strandat 206.734 kb on + strandat 207.534 kb on + strandat 207.541 kb on - strandat 207.643 kb on - strand, within RR42_RS00855at 207.688 kb on - strand, within RR42_RS00855at 207.765 kb on + strand, within RR42_RS00855at 207.765 kb on + strand, within RR42_RS00855at 207.765 kb on + strand, within RR42_RS00855at 207.766 kb on - strand, within RR42_RS00855at 207.766 kb on - strand, within RR42_RS00855at 207.766 kb on - strand, within RR42_RS00855at 207.766 kb on - strand, within RR42_RS00855at 207.830 kb on + strand, within RR42_RS00855at 207.830 kb on + strand, within RR42_RS00855at 207.831 kb on - strand, within RR42_RS00855at 207.831 kb on - strand, within RR42_RS00855at 207.831 kb on - strand, within RR42_RS00855at 207.851 kb on + strand, within RR42_RS00855at 207.851 kb on + strand, within RR42_RS00855at 207.852 kb on - strand, within RR42_RS00855at 207.852 kb on - strand, within RR42_RS00855at 207.852 kb on - strand, within RR42_RS00855at 207.853 kb on + strand, within RR42_RS00855at 207.854 kb on - strand, within RR42_RS00855at 207.854 kb on - strand, within RR42_RS00855at 207.854 kb on - strand, within RR42_RS00855at 207.960 kb on - strand, within RR42_RS00855at 207.967 kb on + strand, within RR42_RS00855at 207.967 kb on + strand, within RR42_RS00855at 207.967 kb on + strand, within RR42_RS00855at 207.967 kb on + strand, within RR42_RS00855at 207.968 kb on - strand, within RR42_RS00855at 207.968 kb on - strand, within RR42_RS00855at 207.968 kb on - strand, within RR42_RS00855at 207.968 kb on - strand, within RR42_RS00855at 207.968 kb on - strand, within RR42_RS00855at 208.036 kb on - strand, within RR42_RS00855at 208.036 kb on - strand, within RR42_RS00855at 208.101 kb on - strand, within RR42_RS00855at 208.101 kb on - strand, within RR42_RS00855at 208.103 kb on + strand, within RR42_RS00855at 208.103 kb on + strand, within RR42_RS00855at 208.103 kb on + strand, within RR42_RS00855at 208.103 kb on + strand, within RR42_RS00855at 208.238 kb on + strand, within RR42_RS00855at 208.238 kb on + strand, within RR42_RS00855at 208.238 kb on + strand, within RR42_RS00855at 208.238 kb on + strand, within RR42_RS00855at 208.239 kb on - strand, within RR42_RS00855at 208.239 kb on - strand, within RR42_RS00855at 208.511 kb on + strandat 208.511 kb on + strandat 208.676 kb on - strandat 208.706 kb on + strandat 208.743 kb on + strandat 208.744 kb on - strandat 208.825 kb on + strandat 208.825 kb on + strandat 208.825 kb on + strandat 208.825 kb on + strandat 208.826 kb on - strandat 208.826 kb on - strandat 208.882 kb on + strand, within RR42_RS00860at 208.945 kb on - strand, within RR42_RS00860at 209.036 kb on - strand, within RR42_RS00860at 209.036 kb on - strand, within RR42_RS00860at 209.151 kb on - strand, within RR42_RS00860at 209.233 kb on + strandat 209.242 kb on - strandat 209.280 kb on - strandat 209.290 kb on - strandat 209.295 kb on - strandat 209.455 kb on + strand, within RR42_RS00865at 209.455 kb on + strand, within RR42_RS00865at 209.456 kb on - strand, within RR42_RS00865at 209.456 kb on - strand, within RR42_RS00865at 209.456 kb on - strand, within RR42_RS00865at 209.456 kb on - strand, within RR42_RS00865at 209.591 kb on + strand, within RR42_RS00865at 209.591 kb on + strand, within RR42_RS00865at 209.592 kb on - strand, within RR42_RS00865

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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206,544 + RR42_RS00845 0.77 -0.1
206,544 + RR42_RS00845 0.77 -0.8
206,590 + RR42_RS00845 0.82 -1.1
206,707 + +0.1
206,707 + +0.2
206,707 + -1.0
206,708 - -0.1
206,708 - -1.3
206,708 - -0.2
206,734 + -1.1
207,534 + +1.1
207,541 - -0.1
207,643 - RR42_RS00855 0.11 +0.1
207,688 - RR42_RS00855 0.15 +2.1
207,765 + RR42_RS00855 0.22 -0.8
207,765 + RR42_RS00855 0.22 -0.1
207,765 + RR42_RS00855 0.22 -0.6
207,766 - RR42_RS00855 0.22 -0.1
207,766 - RR42_RS00855 0.22 -1.0
207,766 - RR42_RS00855 0.22 +0.6
207,766 - RR42_RS00855 0.22 -0.6
207,830 + RR42_RS00855 0.28 -0.9
207,830 + RR42_RS00855 0.28 +0.3
207,831 - RR42_RS00855 0.28 +1.8
207,831 - RR42_RS00855 0.28 -0.1
207,831 - RR42_RS00855 0.28 +0.2
207,851 + RR42_RS00855 0.30 -0.2
207,851 + RR42_RS00855 0.30 -0.5
207,852 - RR42_RS00855 0.30 -0.6
207,852 - RR42_RS00855 0.30 +0.2
207,852 - RR42_RS00855 0.30 +0.5
207,853 + RR42_RS00855 0.30 -0.8
207,854 - RR42_RS00855 0.31 -0.3
207,854 - RR42_RS00855 0.31 -0.2
207,854 - RR42_RS00855 0.31 -0.8
207,960 - RR42_RS00855 0.40 -0.1
207,967 + RR42_RS00855 0.41 -0.7
207,967 + RR42_RS00855 0.41 +0.5
207,967 + RR42_RS00855 0.41 -0.6
207,967 + RR42_RS00855 0.41 -1.5
207,968 - RR42_RS00855 0.41 -0.6
207,968 - RR42_RS00855 0.41 -1.0
207,968 - RR42_RS00855 0.41 +0.5
207,968 - RR42_RS00855 0.41 -0.3
207,968 - RR42_RS00855 0.41 +0.5
208,036 - RR42_RS00855 0.47 +0.1
208,036 - RR42_RS00855 0.47 +0.1
208,101 - RR42_RS00855 0.54 -0.4
208,101 - RR42_RS00855 0.54 +3.1
208,103 + RR42_RS00855 0.54 -0.9
208,103 + RR42_RS00855 0.54 -0.7
208,103 + RR42_RS00855 0.54 +0.7
208,103 + RR42_RS00855 0.54 -1.2
208,238 + RR42_RS00855 0.66 -0.6
208,238 + RR42_RS00855 0.66 +0.0
208,238 + RR42_RS00855 0.66 +0.2
208,238 + RR42_RS00855 0.66 -0.9
208,239 - RR42_RS00855 0.66 -1.0
208,239 - RR42_RS00855 0.66 -0.1
208,511 + -1.8
208,511 + -0.8
208,676 - -0.1
208,706 + +0.6
208,743 + +0.2
208,744 - -0.7
208,825 + -0.4
208,825 + +0.9
208,825 + +0.5
208,825 + -2.7
208,826 - +0.4
208,826 - -1.4
208,882 + RR42_RS00860 0.19 +0.8
208,945 - RR42_RS00860 0.34 -2.1
209,036 - RR42_RS00860 0.55 +0.2
209,036 - RR42_RS00860 0.55 -1.6
209,151 - RR42_RS00860 0.81 -0.5
209,233 + -0.9
209,242 - -0.2
209,280 - -0.5
209,290 - -0.1
209,295 - +1.2
209,455 + RR42_RS00865 0.30 -0.7
209,455 + RR42_RS00865 0.30 -0.8
209,456 - RR42_RS00865 0.30 -0.7
209,456 - RR42_RS00865 0.30 -0.5
209,456 - RR42_RS00865 0.30 +1.5
209,456 - RR42_RS00865 0.30 -0.6
209,591 + RR42_RS00865 0.59 +0.3
209,591 + RR42_RS00865 0.59 -0.4
209,592 - RR42_RS00865 0.60 +1.1

Or see this region's nucleotide sequence