Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27670 and BWI76_RS27675 overlap by 4 nucleotides BWI76_RS27675 and BWI76_RS27680 are separated by 80 nucleotides BWI76_RS27680 and BWI76_RS27685 are separated by 148 nucleotides
BWI76_RS27670: BWI76_RS27670 - LysR family transcriptional regulator, at 5,740,075 to 5,740,989
_RS27670
BWI76_RS27675: BWI76_RS27675 - EmrB/QacA family drug resistance transporter, at 5,740,986 to 5,742,482
_RS27675
BWI76_RS27680: BWI76_RS27680 - TetR family transcriptional regulator, at 5,742,563 to 5,743,210
_RS27680
BWI76_RS27685: BWI76_RS27685 - N-acetyltransferase, at 5,743,359 to 5,743,775
_RS27685
Position (kb) 5740
5741
5742
5743 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 5740.167 kb on - strand, within BWI76_RS27670 at 5740.297 kb on + strand, within BWI76_RS27670 at 5740.356 kb on + strand, within BWI76_RS27670 at 5740.453 kb on - strand, within BWI76_RS27670 at 5740.884 kb on + strand, within BWI76_RS27670 at 5740.884 kb on + strand, within BWI76_RS27670 at 5740.910 kb on + strand at 5740.918 kb on - strand at 5740.968 kb on + strand at 5740.999 kb on + strand at 5741.031 kb on - strand at 5741.141 kb on - strand, within BWI76_RS27675 at 5741.217 kb on + strand, within BWI76_RS27675 at 5741.287 kb on - strand, within BWI76_RS27675 at 5741.296 kb on + strand, within BWI76_RS27675 at 5741.304 kb on - strand, within BWI76_RS27675 at 5741.417 kb on - strand, within BWI76_RS27675 at 5741.556 kb on + strand, within BWI76_RS27675 at 5741.561 kb on + strand, within BWI76_RS27675 at 5741.584 kb on + strand, within BWI76_RS27675 at 5741.594 kb on + strand, within BWI76_RS27675 at 5741.841 kb on + strand, within BWI76_RS27675 at 5742.099 kb on - strand, within BWI76_RS27675 at 5742.169 kb on - strand, within BWI76_RS27675 at 5742.284 kb on - strand, within BWI76_RS27675 at 5742.336 kb on - strand at 5742.477 kb on + strand at 5742.654 kb on + strand, within BWI76_RS27680 at 5742.668 kb on - strand, within BWI76_RS27680 at 5743.065 kb on + strand, within BWI76_RS27680 at 5743.073 kb on - strand, within BWI76_RS27680 at 5743.073 kb on - strand, within BWI76_RS27680 at 5743.073 kb on - strand, within BWI76_RS27680 at 5743.080 kb on + strand, within BWI76_RS27680 at 5743.170 kb on + strand at 5743.178 kb on - strand at 5743.229 kb on + strand at 5743.240 kb on + strand at 5743.247 kb on + strand at 5743.354 kb on - strand at 5743.354 kb on - strand at 5743.396 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 5,740,167 - BWI76_RS27670 0.10 -0.6 5,740,297 + BWI76_RS27670 0.24 -0.1 5,740,356 + BWI76_RS27670 0.31 -0.6 5,740,453 - BWI76_RS27670 0.41 -0.5 5,740,884 + BWI76_RS27670 0.88 +2.2 5,740,884 + BWI76_RS27670 0.88 -0.5 5,740,910 + -0.1 5,740,918 - -0.7 5,740,968 + -0.0 5,740,999 + +4.0 5,741,031 - +1.2 5,741,141 - BWI76_RS27675 0.10 +5.1 5,741,217 + BWI76_RS27675 0.15 +6.0 5,741,287 - BWI76_RS27675 0.20 +5.1 5,741,296 + BWI76_RS27675 0.21 +6.2 5,741,304 - BWI76_RS27675 0.21 +5.0 5,741,417 - BWI76_RS27675 0.29 +6.1 5,741,556 + BWI76_RS27675 0.38 +6.5 5,741,561 + BWI76_RS27675 0.38 +6.4 5,741,584 + BWI76_RS27675 0.40 +5.7 5,741,594 + BWI76_RS27675 0.41 +6.4 5,741,841 + BWI76_RS27675 0.57 +5.9 5,742,099 - BWI76_RS27675 0.74 +6.5 5,742,169 - BWI76_RS27675 0.79 +7.4 5,742,284 - BWI76_RS27675 0.87 +6.5 5,742,336 - +6.0 5,742,477 + +5.1 5,742,654 + BWI76_RS27680 0.14 +0.5 5,742,668 - BWI76_RS27680 0.16 -2.7 5,743,065 + BWI76_RS27680 0.77 -0.5 5,743,073 - BWI76_RS27680 0.79 -3.1 5,743,073 - BWI76_RS27680 0.79 -0.1 5,743,073 - BWI76_RS27680 0.79 +0.1 5,743,080 + BWI76_RS27680 0.80 +0.5 5,743,170 + -3.5 5,743,178 - -0.8 5,743,229 + -1.8 5,743,240 + +0.1 5,743,247 + -0.9 5,743,354 - -1.5 5,743,354 - +0.4 5,743,396 - +0.7
Or see this region's nucleotide sequence