Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23330 and BWI76_RS23335 overlap by 40 nucleotides BWI76_RS23335 and BWI76_RS23340 overlap by 4 nucleotides BWI76_RS23340 and BWI76_RS23345 are separated by 68 nucleotides
BWI76_RS23330: BWI76_RS23330 - transcriptional regulator GalR, at 4,864,840 to 4,865,856
_RS23330
BWI76_RS23335: BWI76_RS23335 - GNAT family acetyltransferase, at 4,865,817 to 4,866,296
_RS23335
BWI76_RS23340: BWI76_RS23340 - transcriptional regulator, at 4,866,293 to 4,867,066
_RS23340
BWI76_RS23345: BWI76_RS23345 - glycoside hydrolase, at 4,867,135 to 4,868,562
_RS23345
Position (kb) 4866
4867
4868 Strain fitness (log2 ratio) -1
0
1
2 at 4865.306 kb on - strand, within BWI76_RS23330 at 4865.395 kb on - strand, within BWI76_RS23330 at 4865.440 kb on + strand, within BWI76_RS23330 at 4865.517 kb on + strand, within BWI76_RS23330 at 4865.962 kb on + strand, within BWI76_RS23335 at 4865.970 kb on - strand, within BWI76_RS23335 at 4865.970 kb on - strand, within BWI76_RS23335 at 4866.007 kb on - strand, within BWI76_RS23335 at 4866.161 kb on + strand, within BWI76_RS23335 at 4866.251 kb on + strand at 4866.274 kb on + strand at 4866.283 kb on + strand at 4866.296 kb on + strand at 4866.597 kb on + strand, within BWI76_RS23340 at 4866.858 kb on - strand, within BWI76_RS23340 at 4867.718 kb on + strand, within BWI76_RS23345 at 4868.058 kb on + strand, within BWI76_RS23345
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 4,865,306 - BWI76_RS23330 0.46 +0.9 4,865,395 - BWI76_RS23330 0.55 +0.6 4,865,440 + BWI76_RS23330 0.59 +1.0 4,865,517 + BWI76_RS23330 0.67 +0.1 4,865,962 + BWI76_RS23335 0.30 -0.2 4,865,970 - BWI76_RS23335 0.32 +0.9 4,865,970 - BWI76_RS23335 0.32 +1.1 4,866,007 - BWI76_RS23335 0.40 +0.1 4,866,161 + BWI76_RS23335 0.72 +0.6 4,866,251 + -1.2 4,866,274 + +2.3 4,866,283 + +0.3 4,866,296 + +0.1 4,866,597 + BWI76_RS23340 0.39 +2.1 4,866,858 - BWI76_RS23340 0.73 +0.4 4,867,718 + BWI76_RS23345 0.41 -0.5 4,868,058 + BWI76_RS23345 0.65 +1.1
Or see this region's nucleotide sequence