Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20810 and BWI76_RS20815 overlap by 4 nucleotides BWI76_RS20815 and BWI76_RS20820 overlap by 23 nucleotides BWI76_RS20820 and BWI76_RS20825 are separated by 12 nucleotides BWI76_RS20825 and BWI76_RS20830 are separated by 159 nucleotides
BWI76_RS20810: BWI76_RS20810 - ethanolamine utilization cobalamin adenosyltransferase, at 4,349,057 to 4,349,860
_RS20810
BWI76_RS20815: BWI76_RS20815 - ethanolamine utilization protein EutQ, at 4,349,857 to 4,350,549
_RS20815
BWI76_RS20820: BWI76_RS20820 - ethanolamine utilization protein EutP, at 4,350,527 to 4,351,006
_RS20820
BWI76_RS20825: BWI76_RS20825 - carboxysome shell protein, at 4,351,019 to 4,351,354
_RS20825
BWI76_RS20830: BWI76_RS20830 - bifunctional malic enzyme oxidoreductase/phosphotransacetylase, at 4,351,514 to 4,353,793
_RS20830
Position (kb) 4350
4351
4352 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4349.958 kb on - strand, within BWI76_RS20815 at 4349.963 kb on + strand, within BWI76_RS20815 at 4350.030 kb on + strand, within BWI76_RS20815 at 4350.040 kb on - strand, within BWI76_RS20815 at 4350.080 kb on - strand, within BWI76_RS20815 at 4350.095 kb on + strand, within BWI76_RS20815 at 4350.141 kb on + strand, within BWI76_RS20815 at 4350.197 kb on - strand, within BWI76_RS20815 at 4350.216 kb on + strand, within BWI76_RS20815 at 4350.224 kb on - strand, within BWI76_RS20815 at 4350.314 kb on + strand, within BWI76_RS20815 at 4350.351 kb on + strand, within BWI76_RS20815 at 4350.606 kb on - strand, within BWI76_RS20820 at 4350.609 kb on + strand, within BWI76_RS20820 at 4350.657 kb on + strand, within BWI76_RS20820 at 4350.665 kb on - strand, within BWI76_RS20820 at 4350.700 kb on + strand, within BWI76_RS20820 at 4350.757 kb on - strand, within BWI76_RS20820 at 4350.761 kb on + strand, within BWI76_RS20820 at 4350.763 kb on - strand, within BWI76_RS20820 at 4350.771 kb on - strand, within BWI76_RS20820 at 4350.778 kb on - strand, within BWI76_RS20820 at 4350.795 kb on + strand, within BWI76_RS20820 at 4350.795 kb on + strand, within BWI76_RS20820 at 4350.796 kb on + strand, within BWI76_RS20820 at 4350.803 kb on - strand, within BWI76_RS20820 at 4350.813 kb on + strand, within BWI76_RS20820 at 4350.813 kb on + strand, within BWI76_RS20820 at 4350.850 kb on - strand, within BWI76_RS20820 at 4350.850 kb on - strand, within BWI76_RS20820 at 4350.863 kb on + strand, within BWI76_RS20820 at 4350.886 kb on - strand, within BWI76_RS20820 at 4350.948 kb on + strand, within BWI76_RS20820 at 4350.956 kb on - strand, within BWI76_RS20820 at 4351.022 kb on + strand at 4351.023 kb on - strand at 4351.030 kb on - strand at 4351.050 kb on - strand at 4351.050 kb on - strand at 4351.050 kb on - strand at 4351.050 kb on - strand at 4351.077 kb on + strand, within BWI76_RS20825 at 4351.077 kb on + strand at 4351.077 kb on + strand, within BWI76_RS20825 at 4351.077 kb on + strand, within BWI76_RS20825 at 4351.077 kb on + strand, within BWI76_RS20825 at 4351.077 kb on + strand, within BWI76_RS20825 at 4351.077 kb on + strand, within BWI76_RS20825 at 4351.077 kb on + strand, within BWI76_RS20825 at 4351.077 kb on - strand, within BWI76_RS20825 at 4351.077 kb on - strand, within BWI76_RS20825 at 4351.077 kb on - strand, within BWI76_RS20825 at 4351.077 kb on - strand, within BWI76_RS20825 at 4351.077 kb on - strand at 4351.077 kb on - strand, within BWI76_RS20825 at 4351.082 kb on + strand, within BWI76_RS20825 at 4351.085 kb on - strand, within BWI76_RS20825 at 4351.085 kb on - strand, within BWI76_RS20825 at 4351.085 kb on - strand, within BWI76_RS20825 at 4351.087 kb on - strand, within BWI76_RS20825 at 4351.091 kb on + strand, within BWI76_RS20825 at 4351.095 kb on - strand, within BWI76_RS20825 at 4351.099 kb on - strand, within BWI76_RS20825 at 4351.221 kb on - strand, within BWI76_RS20825 at 4351.221 kb on - strand, within BWI76_RS20825 at 4351.283 kb on - strand, within BWI76_RS20825 at 4351.310 kb on - strand, within BWI76_RS20825 at 4351.312 kb on - strand, within BWI76_RS20825 at 4351.349 kb on + strand at 4351.356 kb on + strand at 4351.356 kb on + strand at 4351.364 kb on - strand at 4351.364 kb on - strand at 4351.364 kb on - strand at 4351.364 kb on - strand at 4351.368 kb on + strand at 4351.376 kb on - strand at 4351.376 kb on - strand at 4351.376 kb on - strand at 4351.526 kb on + strand at 4351.526 kb on + strand at 4351.529 kb on - strand at 4351.534 kb on - strand at 4351.534 kb on - strand at 4351.534 kb on - strand at 4351.539 kb on + strand at 4351.539 kb on + strand at 4351.576 kb on - strand at 4351.581 kb on - strand at 4351.593 kb on + strand at 4351.594 kb on + strand at 4351.594 kb on + strand at 4351.603 kb on - strand at 4351.603 kb on - strand at 4351.603 kb on - strand at 4351.603 kb on - strand at 4351.603 kb on - strand at 4351.604 kb on - strand at 4351.606 kb on + strand at 4351.606 kb on + strand at 4351.606 kb on + strand at 4351.613 kb on - strand at 4351.617 kb on + strand at 4351.619 kb on + strand at 4351.619 kb on + strand at 4351.619 kb on + strand at 4351.619 kb on + strand at 4351.619 kb on + strand at 4351.619 kb on + strand at 4351.619 kb on + strand at 4351.619 kb on + strand at 4351.619 kb on + strand at 4351.619 kb on + strand at 4351.619 kb on + strand at 4351.619 kb on + strand at 4351.619 kb on + strand at 4351.619 kb on + strand at 4351.619 kb on + strand at 4351.619 kb on + strand at 4351.619 kb on + strand at 4351.619 kb on + strand at 4351.619 kb on + strand at 4351.619 kb on + strand at 4351.619 kb on + strand at 4351.619 kb on - strand at 4351.622 kb on - strand at 4351.622 kb on - strand at 4351.622 kb on - strand at 4351.622 kb on - strand at 4351.625 kb on - strand at 4351.627 kb on - strand at 4351.627 kb on - strand at 4351.627 kb on - strand at 4351.627 kb on - strand at 4351.627 kb on - strand at 4351.627 kb on - strand at 4351.627 kb on - strand at 4351.627 kb on - strand at 4351.627 kb on - strand at 4351.627 kb on - strand at 4351.627 kb on - strand at 4351.627 kb on - strand at 4351.627 kb on - strand at 4351.627 kb on - strand at 4351.627 kb on - strand at 4351.627 kb on - strand at 4351.627 kb on - strand at 4351.627 kb on - strand at 4351.627 kb on - strand at 4351.627 kb on - strand at 4351.627 kb on - strand at 4351.627 kb on - strand at 4351.627 kb on - strand at 4351.629 kb on + strand at 4351.630 kb on + strand at 4351.630 kb on + strand at 4351.638 kb on - strand at 4351.638 kb on - strand at 4351.638 kb on - strand at 4351.643 kb on - strand at 4351.653 kb on - strand at 4351.678 kb on - strand at 4351.720 kb on - strand at 4351.772 kb on - strand, within BWI76_RS20830 at 4351.818 kb on - strand, within BWI76_RS20830
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 4,349,958 - BWI76_RS20815 0.15 -0.3 4,349,963 + BWI76_RS20815 0.15 +0.1 4,350,030 + BWI76_RS20815 0.25 +1.8 4,350,040 - BWI76_RS20815 0.26 +1.4 4,350,080 - BWI76_RS20815 0.32 -0.3 4,350,095 + BWI76_RS20815 0.34 +1.1 4,350,141 + BWI76_RS20815 0.41 +1.8 4,350,197 - BWI76_RS20815 0.49 -1.9 4,350,216 + BWI76_RS20815 0.52 -0.3 4,350,224 - BWI76_RS20815 0.53 -0.1 4,350,314 + BWI76_RS20815 0.66 +0.1 4,350,351 + BWI76_RS20815 0.71 -0.3 4,350,606 - BWI76_RS20820 0.16 -0.2 4,350,609 + BWI76_RS20820 0.17 +1.1 4,350,657 + BWI76_RS20820 0.27 +0.3 4,350,665 - BWI76_RS20820 0.29 +1.8 4,350,700 + BWI76_RS20820 0.36 +0.4 4,350,757 - BWI76_RS20820 0.48 +1.0 4,350,761 + BWI76_RS20820 0.49 +0.6 4,350,763 - BWI76_RS20820 0.49 +0.6 4,350,771 - BWI76_RS20820 0.51 +0.3 4,350,778 - BWI76_RS20820 0.52 -0.2 4,350,795 + BWI76_RS20820 0.56 +0.3 4,350,795 + BWI76_RS20820 0.56 +0.2 4,350,796 + BWI76_RS20820 0.56 +1.3 4,350,803 - BWI76_RS20820 0.57 +0.3 4,350,813 + BWI76_RS20820 0.60 +0.9 4,350,813 + BWI76_RS20820 0.60 +0.6 4,350,850 - BWI76_RS20820 0.67 +2.3 4,350,850 - BWI76_RS20820 0.67 +1.5 4,350,863 + BWI76_RS20820 0.70 -0.1 4,350,886 - BWI76_RS20820 0.75 -0.3 4,350,948 + BWI76_RS20820 0.88 -0.5 4,350,956 - BWI76_RS20820 0.89 -1.2 4,351,022 + +0.6 4,351,023 - -0.7 4,351,030 - -0.3 4,351,050 - +1.1 4,351,050 - -0.7 4,351,050 - -0.1 4,351,050 - -0.8 4,351,077 + BWI76_RS20825 0.17 -1.0 4,351,077 + +1.7 4,351,077 + BWI76_RS20825 0.17 -0.2 4,351,077 + BWI76_RS20825 0.17 -0.5 4,351,077 + BWI76_RS20825 0.17 +0.2 4,351,077 + BWI76_RS20825 0.17 +0.8 4,351,077 + BWI76_RS20825 0.17 -0.2 4,351,077 + BWI76_RS20825 0.17 -1.5 4,351,077 - BWI76_RS20825 0.17 +0.5 4,351,077 - BWI76_RS20825 0.17 -0.2 4,351,077 - BWI76_RS20825 0.17 -1.4 4,351,077 - BWI76_RS20825 0.17 +0.4 4,351,077 - -0.3 4,351,077 - BWI76_RS20825 0.17 -1.5 4,351,082 + BWI76_RS20825 0.19 +0.1 4,351,085 - BWI76_RS20825 0.20 +0.9 4,351,085 - BWI76_RS20825 0.20 -0.1 4,351,085 - BWI76_RS20825 0.20 -0.7 4,351,087 - BWI76_RS20825 0.20 -0.3 4,351,091 + BWI76_RS20825 0.21 +1.0 4,351,095 - BWI76_RS20825 0.23 +0.1 4,351,099 - BWI76_RS20825 0.24 -0.2 4,351,221 - BWI76_RS20825 0.60 +1.9 4,351,221 - BWI76_RS20825 0.60 +0.3 4,351,283 - BWI76_RS20825 0.79 -0.2 4,351,310 - BWI76_RS20825 0.87 +1.1 4,351,312 - BWI76_RS20825 0.87 -3.1 4,351,349 + -0.1 4,351,356 + +0.0 4,351,356 + +1.6 4,351,364 - +1.3 4,351,364 - +0.0 4,351,364 - +0.4 4,351,364 - -0.9 4,351,368 + +0.7 4,351,376 - +0.5 4,351,376 - +0.0 4,351,376 - -0.6 4,351,526 + -0.2 4,351,526 + +0.9 4,351,529 - -0.7 4,351,534 - +1.5 4,351,534 - -1.5 4,351,534 - +0.1 4,351,539 + +0.7 4,351,539 + -0.2 4,351,576 - +0.5 4,351,581 - +0.0 4,351,593 + +1.6 4,351,594 + -1.5 4,351,594 + -1.0 4,351,603 - +0.0 4,351,603 - +0.4 4,351,603 - +0.3 4,351,603 - +1.2 4,351,603 - +1.0 4,351,604 - +1.5 4,351,606 + +0.2 4,351,606 + +1.9 4,351,606 + +0.0 4,351,613 - +0.2 4,351,617 + -0.2 4,351,619 + +0.3 4,351,619 + -0.4 4,351,619 + +0.3 4,351,619 + -0.0 4,351,619 + -0.2 4,351,619 + -1.4 4,351,619 + +1.9 4,351,619 + -0.3 4,351,619 + -0.6 4,351,619 + -0.9 4,351,619 + +0.4 4,351,619 + +0.1 4,351,619 + +0.2 4,351,619 + -1.6 4,351,619 + +0.7 4,351,619 + -0.7 4,351,619 + -2.3 4,351,619 + -0.3 4,351,619 + -0.4 4,351,619 + -0.1 4,351,619 + -0.0 4,351,619 - -0.4 4,351,622 - -0.3 4,351,622 - +0.9 4,351,622 - +0.6 4,351,622 - -1.0 4,351,625 - +0.7 4,351,627 - +0.8 4,351,627 - -0.6 4,351,627 - -0.2 4,351,627 - +0.6 4,351,627 - +0.0 4,351,627 - +0.2 4,351,627 - +0.8 4,351,627 - -0.3 4,351,627 - +0.0 4,351,627 - +1.2 4,351,627 - +0.5 4,351,627 - +0.0 4,351,627 - -0.5 4,351,627 - -0.3 4,351,627 - +0.1 4,351,627 - -1.0 4,351,627 - +0.1 4,351,627 - -0.0 4,351,627 - -0.1 4,351,627 - -0.3 4,351,627 - +1.4 4,351,627 - +1.4 4,351,627 - +0.1 4,351,629 + +0.3 4,351,630 + +0.7 4,351,630 + +0.8 4,351,638 - +1.6 4,351,638 - -2.9 4,351,638 - +0.4 4,351,643 - +1.3 4,351,653 - +1.3 4,351,678 - -0.6 4,351,720 - +0.3 4,351,772 - BWI76_RS20830 0.11 -0.0 4,351,818 - BWI76_RS20830 0.13 +0.8
Or see this region's nucleotide sequence