Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16290 and BWI76_RS16295 are separated by 174 nucleotides BWI76_RS16295 and BWI76_RS16300 are separated by 48 nucleotides
BWI76_RS16290: BWI76_RS16290 - Mal regulon transcriptional regulator MalI, at 3,381,335 to 3,382,363
_RS16290
BWI76_RS16295: BWI76_RS16295 - bifunctional PTS system maltose and glucose-specific transporter subunits IICB, at 3,382,538 to 3,384,130
_RS16295
BWI76_RS16300: BWI76_RS16300 - bifunctional beta-cystathionase/maltose regulon regulatory protein, at 3,384,179 to 3,385,357
_RS16300
Position (kb)
3382
3383
3384
3385 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3381.580 kb on + strand, within BWI76_RS16290 at 3382.293 kb on - strand at 3382.358 kb on + strand at 3382.599 kb on + strand at 3382.606 kb on - strand at 3382.624 kb on - strand at 3382.666 kb on - strand at 3382.721 kb on + strand, within BWI76_RS16295 at 3382.932 kb on - strand, within BWI76_RS16295 at 3383.087 kb on - strand, within BWI76_RS16295 at 3383.188 kb on - strand, within BWI76_RS16295 at 3383.362 kb on - strand, within BWI76_RS16295 at 3383.627 kb on - strand, within BWI76_RS16295 at 3383.693 kb on - strand, within BWI76_RS16295 at 3383.890 kb on - strand, within BWI76_RS16295 at 3383.966 kb on - strand, within BWI76_RS16295 at 3384.044 kb on - strand at 3384.074 kb on + strand at 3384.219 kb on + strand at 3384.219 kb on + strand at 3384.710 kb on + strand, within BWI76_RS16300 at 3384.859 kb on + strand, within BWI76_RS16300 at 3384.859 kb on + strand, within BWI76_RS16300
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 3,381,580 + BWI76_RS16290 0.24 +0.2 3,382,293 - -1.2 3,382,358 + -1.4 3,382,599 + +0.3 3,382,606 - -1.1 3,382,624 - -0.1 3,382,666 - +0.8 3,382,721 + BWI76_RS16295 0.11 +1.4 3,382,932 - BWI76_RS16295 0.25 +0.9 3,383,087 - BWI76_RS16295 0.34 +2.6 3,383,188 - BWI76_RS16295 0.41 -0.4 3,383,362 - BWI76_RS16295 0.52 +3.0 3,383,627 - BWI76_RS16295 0.68 +0.1 3,383,693 - BWI76_RS16295 0.73 +0.3 3,383,890 - BWI76_RS16295 0.85 -0.7 3,383,966 - BWI76_RS16295 0.90 +0.2 3,384,044 - +0.4 3,384,074 + +0.3 3,384,219 + +0.9 3,384,219 + +1.2 3,384,710 + BWI76_RS16300 0.45 -0.9 3,384,859 + BWI76_RS16300 0.58 +0.3 3,384,859 + BWI76_RS16300 0.58 +0.3
Or see this region's nucleotide sequence