Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12575 and BWI76_RS12580 overlap by 4 nucleotides BWI76_RS12580 and BWI76_RS12585 overlap by 4 nucleotides BWI76_RS12585 and BWI76_RS12590 are separated by 264 nucleotides
BWI76_RS12575: BWI76_RS12575 - FAD-dependent oxidoreductase, at 2,625,455 to 2,626,714
_RS12575
BWI76_RS12580: BWI76_RS12580 - oxidoreductase, at 2,626,711 to 2,627,430
_RS12580
BWI76_RS12585: BWI76_RS12585 - transcriptional regulator, at 2,627,427 to 2,627,861
_RS12585
BWI76_RS12590: BWI76_RS12590 - helix-turn-helix-type transcriptional regulator, at 2,628,126 to 2,628,854
_RS12590
Position (kb)
2626
2627
2628 Strain fitness (log2 ratio)
-1
0
1
2 at 2625.891 kb on + strand, within BWI76_RS12575 at 2625.925 kb on - strand, within BWI76_RS12575 at 2626.238 kb on - strand, within BWI76_RS12575 at 2626.278 kb on - strand, within BWI76_RS12575 at 2626.640 kb on + strand at 2626.709 kb on + strand at 2626.785 kb on + strand, within BWI76_RS12580 at 2626.786 kb on + strand, within BWI76_RS12580 at 2626.998 kb on - strand, within BWI76_RS12580 at 2627.336 kb on - strand, within BWI76_RS12580 at 2627.404 kb on + strand at 2627.610 kb on + strand, within BWI76_RS12585 at 2627.726 kb on + strand, within BWI76_RS12585 at 2627.801 kb on + strand, within BWI76_RS12585 at 2627.815 kb on + strand, within BWI76_RS12585 at 2627.868 kb on + strand at 2627.868 kb on + strand at 2627.868 kb on + strand at 2628.058 kb on - strand at 2628.400 kb on - strand, within BWI76_RS12590 at 2628.416 kb on - strand, within BWI76_RS12590
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 2,625,891 + BWI76_RS12575 0.35 +1.5 2,625,925 - BWI76_RS12575 0.37 -0.1 2,626,238 - BWI76_RS12575 0.62 -0.6 2,626,278 - BWI76_RS12575 0.65 +0.5 2,626,640 + -0.2 2,626,709 + -0.1 2,626,785 + BWI76_RS12580 0.10 +1.6 2,626,786 + BWI76_RS12580 0.10 +1.8 2,626,998 - BWI76_RS12580 0.40 +0.5 2,627,336 - BWI76_RS12580 0.87 +0.1 2,627,404 + +0.9 2,627,610 + BWI76_RS12585 0.42 -0.4 2,627,726 + BWI76_RS12585 0.69 -0.4 2,627,801 + BWI76_RS12585 0.86 -0.6 2,627,815 + BWI76_RS12585 0.89 +2.2 2,627,868 + +0.2 2,627,868 + -0.3 2,627,868 + -0.2 2,628,058 - -1.3 2,628,400 - BWI76_RS12590 0.38 -0.3 2,628,416 - BWI76_RS12590 0.40 -1.2
Or see this region's nucleotide sequence