Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11010 and BWI76_RS11015 are separated by 9 nucleotides BWI76_RS11015 and BWI76_RS11020 are separated by 2 nucleotides BWI76_RS11020 and BWI76_RS11025 are separated by 112 nucleotides
BWI76_RS11010: BWI76_RS11010 - 30S ribosomal protein S5 alanine N-acetyltransferase, at 2,322,346 to 2,322,930
_RS11010
BWI76_RS11015: BWI76_RS11015 - hypothetical protein, at 2,322,940 to 2,323,587
_RS11015
BWI76_RS11020: BWI76_RS11020 - oxidoreductase family, NAD-binding protein, at 2,323,590 to 2,324,513
_RS11020
BWI76_RS11025: BWI76_RS11025 - lipid II flippase MurJ, at 2,324,626 to 2,326,161
_RS11025
Position (kb)
2323
2324
2325 Strain fitness (log2 ratio)
-1
0
1
2 at 2322.708 kb on - strand, within BWI76_RS11010 at 2322.751 kb on + strand, within BWI76_RS11010 at 2323.022 kb on - strand, within BWI76_RS11015 at 2323.042 kb on - strand, within BWI76_RS11015 at 2323.186 kb on - strand, within BWI76_RS11015 at 2323.889 kb on + strand, within BWI76_RS11020 at 2324.161 kb on - strand, within BWI76_RS11020 at 2324.368 kb on + strand, within BWI76_RS11020 at 2324.376 kb on - strand, within BWI76_RS11020 at 2324.376 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 2,322,708 - BWI76_RS11010 0.62 -0.5 2,322,751 + BWI76_RS11010 0.69 +0.3 2,323,022 - BWI76_RS11015 0.13 -1.4 2,323,042 - BWI76_RS11015 0.16 -1.3 2,323,186 - BWI76_RS11015 0.38 -0.1 2,323,889 + BWI76_RS11020 0.32 +0.3 2,324,161 - BWI76_RS11020 0.62 +0.9 2,324,368 + BWI76_RS11020 0.84 +1.7 2,324,376 - BWI76_RS11020 0.85 -0.6 2,324,376 - +2.2
Or see this region's nucleotide sequence