Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07760 and BWI76_RS07765 are separated by 0 nucleotides BWI76_RS07765 and BWI76_RS07770 are separated by 122 nucleotides BWI76_RS07770 and BWI76_RS07775 are separated by 39 nucleotides BWI76_RS07775 and BWI76_RS07780 are separated by 55 nucleotides BWI76_RS07780 and BWI76_RS07785 overlap by 4 nucleotides BWI76_RS07785 and BWI76_RS07790 overlap by 20 nucleotides
BWI76_RS07760: BWI76_RS07760 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, at 1,646,973 to 1,647,728
_RS07760
BWI76_RS07765: BWI76_RS07765 - thioesterase, at 1,647,729 to 1,648,142
_RS07765
BWI76_RS07770: BWI76_RS07770 - hypothetical protein, at 1,648,265 to 1,648,485
_RS07770
BWI76_RS07775: BWI76_RS07775 - carbon starvation protein A, at 1,648,525 to 1,650,630
_RS07775
BWI76_RS07780: BWI76_RS07780 - hypothetical protein, at 1,650,686 to 1,650,883
_RS07780
BWI76_RS07785: BWI76_RS07785 - transcriptional regulator, at 1,650,880 to 1,651,284
_RS07785
BWI76_RS07790: BWI76_RS07790 - plasmid stabilization protein, at 1,651,265 to 1,651,566
_RS07790
Position (kb) 1648
1649
1650
1651 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1647.815 kb on - strand, within BWI76_RS07765 at 1647.825 kb on - strand, within BWI76_RS07765 at 1647.873 kb on - strand, within BWI76_RS07765 at 1648.232 kb on - strand at 1648.420 kb on - strand, within BWI76_RS07770 at 1648.512 kb on + strand at 1648.553 kb on + strand at 1648.912 kb on + strand, within BWI76_RS07775 at 1649.092 kb on - strand, within BWI76_RS07775 at 1649.193 kb on - strand, within BWI76_RS07775 at 1649.195 kb on - strand, within BWI76_RS07775 at 1649.367 kb on + strand, within BWI76_RS07775 at 1649.544 kb on - strand, within BWI76_RS07775 at 1649.601 kb on + strand, within BWI76_RS07775 at 1649.647 kb on - strand, within BWI76_RS07775 at 1649.974 kb on - strand, within BWI76_RS07775 at 1650.134 kb on + strand, within BWI76_RS07775 at 1650.134 kb on + strand, within BWI76_RS07775 at 1650.242 kb on - strand, within BWI76_RS07775 at 1650.594 kb on - strand at 1650.633 kb on - strand at 1650.657 kb on - strand at 1650.773 kb on - strand, within BWI76_RS07780 at 1650.886 kb on - strand at 1650.966 kb on + strand, within BWI76_RS07785 at 1651.005 kb on + strand, within BWI76_RS07785 at 1651.288 kb on - strand at 1651.430 kb on - strand, within BWI76_RS07790
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 1,647,815 - BWI76_RS07765 0.21 -0.3 1,647,825 - BWI76_RS07765 0.23 -2.3 1,647,873 - BWI76_RS07765 0.35 -0.6 1,648,232 - +1.1 1,648,420 - BWI76_RS07770 0.70 -1.9 1,648,512 + +0.7 1,648,553 + -0.7 1,648,912 + BWI76_RS07775 0.18 +0.5 1,649,092 - BWI76_RS07775 0.27 +2.4 1,649,193 - BWI76_RS07775 0.32 +1.7 1,649,195 - BWI76_RS07775 0.32 -0.6 1,649,367 + BWI76_RS07775 0.40 +1.3 1,649,544 - BWI76_RS07775 0.48 -1.9 1,649,601 + BWI76_RS07775 0.51 -1.7 1,649,647 - BWI76_RS07775 0.53 +1.0 1,649,974 - BWI76_RS07775 0.69 -1.1 1,650,134 + BWI76_RS07775 0.76 +0.5 1,650,134 + BWI76_RS07775 0.76 +1.7 1,650,242 - BWI76_RS07775 0.82 +0.9 1,650,594 - +0.3 1,650,633 - +0.3 1,650,657 - -0.2 1,650,773 - BWI76_RS07780 0.44 -0.3 1,650,886 - +0.8 1,650,966 + BWI76_RS07785 0.21 +0.0 1,651,005 + BWI76_RS07785 0.31 -0.7 1,651,288 - -2.1 1,651,430 - BWI76_RS07790 0.55 +0.2
Or see this region's nucleotide sequence