Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04165 and BWI76_RS04170 are separated by 21 nucleotides BWI76_RS04170 and BWI76_RS04175 are separated by 98 nucleotides
BWI76_RS04165: BWI76_RS04165 - DNA repair protein RadA, at 856,653 to 858,035
_RS04165
BWI76_RS04170: BWI76_RS04170 - trifunctional nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase/transcriptional regulator NadR, at 858,057 to 859,289
_RS04170
BWI76_RS04175: BWI76_RS04175 - energy-dependent translational throttle protein EttA, at 859,388 to 861,055
_RS04175
Position (kb) 858
859
860 Strain fitness (log2 ratio) -1
0
1
2 at 857.087 kb on - strand, within BWI76_RS04165 at 857.376 kb on - strand, within BWI76_RS04165 at 857.473 kb on + strand, within BWI76_RS04165 at 857.652 kb on + strand, within BWI76_RS04165 at 857.682 kb on + strand, within BWI76_RS04165 at 857.999 kb on + strand at 858.067 kb on - strand at 858.314 kb on + strand, within BWI76_RS04170 at 858.324 kb on - strand, within BWI76_RS04170 at 858.530 kb on - strand, within BWI76_RS04170 at 858.594 kb on - strand, within BWI76_RS04170 at 858.772 kb on - strand, within BWI76_RS04170 at 858.893 kb on + strand, within BWI76_RS04170 at 859.069 kb on + strand, within BWI76_RS04170 at 859.127 kb on - strand, within BWI76_RS04170 at 859.167 kb on + strand at 859.208 kb on - strand at 859.257 kb on - strand at 859.318 kb on + strand at 859.507 kb on + strand at 859.589 kb on + strand, within BWI76_RS04175 at 859.713 kb on + strand, within BWI76_RS04175 at 859.742 kb on - strand, within BWI76_RS04175 at 860.196 kb on + strand, within BWI76_RS04175
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 857,087 - BWI76_RS04165 0.31 +0.8 857,376 - BWI76_RS04165 0.52 -0.2 857,473 + BWI76_RS04165 0.59 +0.7 857,652 + BWI76_RS04165 0.72 +0.8 857,682 + BWI76_RS04165 0.74 -0.3 857,999 + -0.1 858,067 - +0.2 858,314 + BWI76_RS04170 0.21 +0.7 858,324 - BWI76_RS04170 0.22 +0.5 858,530 - BWI76_RS04170 0.38 +0.8 858,594 - BWI76_RS04170 0.44 +1.0 858,772 - BWI76_RS04170 0.58 +1.8 858,893 + BWI76_RS04170 0.68 +0.8 859,069 + BWI76_RS04170 0.82 +1.4 859,127 - BWI76_RS04170 0.87 +0.2 859,167 + +0.5 859,208 - +0.4 859,257 - +0.6 859,318 + -1.2 859,507 + -1.4 859,589 + BWI76_RS04175 0.12 +0.6 859,713 + BWI76_RS04175 0.19 -0.3 859,742 - BWI76_RS04175 0.21 -1.5 860,196 + BWI76_RS04175 0.48 -1.3
Or see this region's nucleotide sequence