Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03775 and BWI76_RS03780 are separated by 89 nucleotides BWI76_RS03780 and BWI76_RS03785 are separated by 46 nucleotides BWI76_RS03785 and BWI76_RS03790 are separated by 82 nucleotides BWI76_RS03790 and BWI76_RS03795 are separated by 178 nucleotides
BWI76_RS03775: BWI76_RS03775 - ricin B lectin, at 782,257 to 782,691
_RS03775
BWI76_RS03780: BWI76_RS03780 - threonine transporter RhtB, at 782,781 to 783,422
_RS03780
BWI76_RS03785: BWI76_RS03785 - AraC family transcriptional regulator, at 783,469 to 784,284
_RS03785
BWI76_RS03790: BWI76_RS03790 - hypothetical protein, at 784,367 to 784,822
_RS03790
BWI76_RS03795: BWI76_RS03795 - putative aldehyde dehydrogenase, at 785,001 to 786,371
_RS03795
Position (kb) 783
784
785 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 782.482 kb on - strand, within BWI76_RS03775 at 782.485 kb on + strand, within BWI76_RS03775 at 782.489 kb on - strand, within BWI76_RS03775 at 782.490 kb on + strand, within BWI76_RS03775 at 782.490 kb on + strand, within BWI76_RS03775 at 782.498 kb on - strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.512 kb on + strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.520 kb on - strand, within BWI76_RS03775 at 782.563 kb on + strand, within BWI76_RS03775 at 782.563 kb on + strand, within BWI76_RS03775 at 782.566 kb on - strand, within BWI76_RS03775 at 782.571 kb on + strand, within BWI76_RS03775 at 782.571 kb on - strand, within BWI76_RS03775 at 782.573 kb on + strand at 782.573 kb on + strand, within BWI76_RS03775 at 782.573 kb on + strand, within BWI76_RS03775 at 782.580 kb on + strand, within BWI76_RS03775 at 782.580 kb on + strand, within BWI76_RS03775 at 782.581 kb on - strand, within BWI76_RS03775 at 782.581 kb on - strand, within BWI76_RS03775 at 782.581 kb on - strand, within BWI76_RS03775 at 782.582 kb on - strand, within BWI76_RS03775 at 782.585 kb on + strand, within BWI76_RS03775 at 782.590 kb on + strand, within BWI76_RS03775 at 782.590 kb on + strand, within BWI76_RS03775 at 782.611 kb on - strand, within BWI76_RS03775 at 782.611 kb on - strand, within BWI76_RS03775 at 782.627 kb on + strand, within BWI76_RS03775 at 782.635 kb on - strand, within BWI76_RS03775 at 782.635 kb on - strand, within BWI76_RS03775 at 782.643 kb on + strand, within BWI76_RS03775 at 782.645 kb on + strand, within BWI76_RS03775 at 782.651 kb on - strand at 782.651 kb on - strand at 782.660 kb on + strand at 782.732 kb on + strand at 782.742 kb on + strand at 782.751 kb on + strand at 782.751 kb on + strand at 782.751 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.752 kb on + strand at 782.754 kb on - strand at 782.757 kb on + strand at 782.759 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.760 kb on - strand at 782.788 kb on + strand at 782.801 kb on + strand at 782.821 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.832 kb on + strand at 782.832 kb on + strand at 782.832 kb on + strand at 782.832 kb on + strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.836 kb on - strand at 782.840 kb on - strand at 782.840 kb on - strand at 782.840 kb on - strand at 782.841 kb on - strand at 782.847 kb on - strand, within BWI76_RS03780 at 782.852 kb on - strand, within BWI76_RS03780 at 782.856 kb on + strand, within BWI76_RS03780 at 782.857 kb on - strand, within BWI76_RS03780 at 782.862 kb on - strand, within BWI76_RS03780 at 782.877 kb on + strand, within BWI76_RS03780 at 782.882 kb on + strand, within BWI76_RS03780 at 782.882 kb on + strand, within BWI76_RS03780 at 782.882 kb on + strand, within BWI76_RS03780 at 782.884 kb on + strand, within BWI76_RS03780 at 782.884 kb on + strand, within BWI76_RS03780 at 782.885 kb on - strand, within BWI76_RS03780 at 782.889 kb on + strand, within BWI76_RS03780 at 782.892 kb on - strand, within BWI76_RS03780 at 782.892 kb on - strand, within BWI76_RS03780 at 782.892 kb on - strand, within BWI76_RS03780 at 782.893 kb on + strand, within BWI76_RS03780 at 782.902 kb on + strand, within BWI76_RS03780 at 782.910 kb on + strand, within BWI76_RS03780 at 782.920 kb on + strand, within BWI76_RS03780 at 782.928 kb on - strand, within BWI76_RS03780 at 782.974 kb on + strand, within BWI76_RS03780 at 783.013 kb on + strand, within BWI76_RS03780 at 783.013 kb on + strand, within BWI76_RS03780 at 783.013 kb on + strand, within BWI76_RS03780 at 783.021 kb on - strand, within BWI76_RS03780 at 783.021 kb on - strand, within BWI76_RS03780 at 783.021 kb on - strand, within BWI76_RS03780 at 783.108 kb on - strand, within BWI76_RS03780 at 783.108 kb on - strand, within BWI76_RS03780 at 783.177 kb on - strand, within BWI76_RS03780 at 783.271 kb on + strand, within BWI76_RS03780 at 783.299 kb on + strand, within BWI76_RS03780 at 783.313 kb on + strand, within BWI76_RS03780 at 783.321 kb on - strand, within BWI76_RS03780 at 783.346 kb on + strand, within BWI76_RS03780 at 783.346 kb on + strand, within BWI76_RS03780 at 783.351 kb on + strand, within BWI76_RS03780 at 783.396 kb on + strand at 783.411 kb on + strand at 783.440 kb on + strand at 783.441 kb on - strand at 783.444 kb on + strand at 783.450 kb on + strand at 783.450 kb on + strand at 783.450 kb on + strand at 783.450 kb on + strand at 783.452 kb on - strand at 783.458 kb on - strand at 783.458 kb on - strand at 783.458 kb on - strand at 783.546 kb on - strand at 783.658 kb on - strand, within BWI76_RS03785 at 783.701 kb on + strand, within BWI76_RS03785 at 783.709 kb on - strand, within BWI76_RS03785 at 783.711 kb on + strand, within BWI76_RS03785 at 783.929 kb on - strand, within BWI76_RS03785 at 784.028 kb on + strand, within BWI76_RS03785 at 784.050 kb on + strand, within BWI76_RS03785 at 784.050 kb on + strand, within BWI76_RS03785 at 784.057 kb on + strand, within BWI76_RS03785 at 784.058 kb on - strand, within BWI76_RS03785 at 784.065 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.212 kb on - strand at 784.301 kb on - strand at 784.301 kb on - strand at 784.334 kb on - strand at 784.427 kb on - strand, within BWI76_RS03790 at 784.457 kb on + strand, within BWI76_RS03790 at 784.504 kb on + strand, within BWI76_RS03790 at 784.512 kb on - strand, within BWI76_RS03790 at 784.692 kb on + strand, within BWI76_RS03790 at 784.725 kb on + strand, within BWI76_RS03790 at 784.939 kb on + strand at 784.959 kb on + strand at 784.997 kb on + strand at 785.090 kb on - strand at 785.151 kb on + strand, within BWI76_RS03795 at 785.159 kb on - strand, within BWI76_RS03795
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 782,482 - BWI76_RS03775 0.52 +0.9 782,485 + BWI76_RS03775 0.52 +0.9 782,489 - BWI76_RS03775 0.53 -3.1 782,490 + BWI76_RS03775 0.54 -0.8 782,490 + BWI76_RS03775 0.54 -0.3 782,498 - BWI76_RS03775 0.55 -1.0 782,512 + BWI76_RS03775 0.59 -0.5 782,512 + BWI76_RS03775 0.59 -0.5 782,512 + BWI76_RS03775 0.59 +0.4 782,512 + BWI76_RS03775 0.59 -0.5 782,512 + BWI76_RS03775 0.59 -0.1 782,512 + BWI76_RS03775 0.59 +0.1 782,512 + BWI76_RS03775 0.59 -0.7 782,512 + BWI76_RS03775 0.59 -0.3 782,512 + BWI76_RS03775 0.59 +0.0 782,512 + BWI76_RS03775 0.59 -1.1 782,512 + BWI76_RS03775 0.59 -0.7 782,512 + BWI76_RS03775 0.59 -0.8 782,512 + BWI76_RS03775 0.59 -0.9 782,520 - BWI76_RS03775 0.60 +0.6 782,520 - BWI76_RS03775 0.60 -1.0 782,520 - BWI76_RS03775 0.60 -1.0 782,520 - BWI76_RS03775 0.60 -1.2 782,520 - BWI76_RS03775 0.60 +0.5 782,520 - BWI76_RS03775 0.60 -0.2 782,520 - BWI76_RS03775 0.60 -0.7 782,520 - BWI76_RS03775 0.60 -0.4 782,520 - BWI76_RS03775 0.60 +0.5 782,563 + BWI76_RS03775 0.70 -0.7 782,563 + BWI76_RS03775 0.70 -2.1 782,566 - BWI76_RS03775 0.71 -2.7 782,571 + BWI76_RS03775 0.72 -0.1 782,571 - BWI76_RS03775 0.72 -0.0 782,573 + +2.9 782,573 + BWI76_RS03775 0.73 -0.8 782,573 + BWI76_RS03775 0.73 -1.5 782,580 + BWI76_RS03775 0.74 -1.4 782,580 + BWI76_RS03775 0.74 -1.0 782,581 - BWI76_RS03775 0.74 -0.5 782,581 - BWI76_RS03775 0.74 +0.5 782,581 - BWI76_RS03775 0.74 +0.2 782,582 - BWI76_RS03775 0.75 -1.8 782,585 + BWI76_RS03775 0.75 +1.9 782,590 + BWI76_RS03775 0.77 -0.4 782,590 + BWI76_RS03775 0.77 -0.6 782,611 - BWI76_RS03775 0.81 -0.0 782,611 - BWI76_RS03775 0.81 +0.2 782,627 + BWI76_RS03775 0.85 +0.1 782,635 - BWI76_RS03775 0.87 +0.7 782,635 - BWI76_RS03775 0.87 +0.5 782,643 + BWI76_RS03775 0.89 +0.6 782,645 + BWI76_RS03775 0.89 +0.5 782,651 - -1.1 782,651 - -0.2 782,660 + +0.5 782,732 + +1.5 782,742 + +0.4 782,751 + -1.6 782,751 + +2.5 782,751 + -0.0 782,752 + +0.5 782,752 + -0.8 782,752 + +1.0 782,752 + -0.1 782,752 + -0.1 782,752 + +1.5 782,752 + +0.7 782,752 + +0.4 782,752 + +0.5 782,752 + +0.2 782,752 + -0.3 782,752 + +0.6 782,752 + +0.8 782,752 + +0.3 782,752 + +0.7 782,752 + -1.0 782,752 + -2.0 782,752 + +0.8 782,752 + +0.5 782,754 - -1.2 782,757 + +0.2 782,759 - -1.4 782,760 - -0.9 782,760 - -0.5 782,760 - +0.9 782,760 - -0.1 782,760 - +0.1 782,760 - -0.8 782,760 - -0.3 782,760 - -1.5 782,760 - -1.5 782,760 - -0.2 782,760 - -1.8 782,788 + +0.2 782,801 + +0.1 782,821 + -1.4 782,828 + -0.7 782,828 + +1.8 782,828 + -0.9 782,828 + -0.0 782,828 + +0.9 782,828 + -0.7 782,828 + +0.0 782,828 + +0.5 782,828 + -0.1 782,828 + +0.4 782,832 + -0.6 782,832 + +1.3 782,832 + -0.5 782,832 + +0.3 782,836 - +0.4 782,836 - -0.4 782,836 - -0.4 782,836 - +0.5 782,836 - -0.8 782,836 - +0.1 782,836 - +0.2 782,836 - -0.6 782,836 - -0.1 782,836 - +0.1 782,836 - -0.4 782,836 - +0.6 782,840 - -0.4 782,840 - +0.9 782,840 - +1.5 782,841 - -0.8 782,847 - BWI76_RS03780 0.10 -0.4 782,852 - BWI76_RS03780 0.11 +0.5 782,856 + BWI76_RS03780 0.12 -0.7 782,857 - BWI76_RS03780 0.12 +0.2 782,862 - BWI76_RS03780 0.13 -1.2 782,877 + BWI76_RS03780 0.15 -0.5 782,882 + BWI76_RS03780 0.16 +0.7 782,882 + BWI76_RS03780 0.16 -0.7 782,882 + BWI76_RS03780 0.16 -0.4 782,884 + BWI76_RS03780 0.16 -0.3 782,884 + BWI76_RS03780 0.16 -0.4 782,885 - BWI76_RS03780 0.16 -2.9 782,889 + BWI76_RS03780 0.17 -0.0 782,892 - BWI76_RS03780 0.17 +0.2 782,892 - BWI76_RS03780 0.17 +0.0 782,892 - BWI76_RS03780 0.17 -0.5 782,893 + BWI76_RS03780 0.17 +0.1 782,902 + BWI76_RS03780 0.19 +0.9 782,910 + BWI76_RS03780 0.20 +0.2 782,920 + BWI76_RS03780 0.22 +0.7 782,928 - BWI76_RS03780 0.23 +0.5 782,974 + BWI76_RS03780 0.30 +0.8 783,013 + BWI76_RS03780 0.36 -0.1 783,013 + BWI76_RS03780 0.36 -0.0 783,013 + BWI76_RS03780 0.36 +0.2 783,021 - BWI76_RS03780 0.37 -0.5 783,021 - BWI76_RS03780 0.37 +1.2 783,021 - BWI76_RS03780 0.37 -0.2 783,108 - BWI76_RS03780 0.51 +0.5 783,108 - BWI76_RS03780 0.51 -0.4 783,177 - BWI76_RS03780 0.62 -0.2 783,271 + BWI76_RS03780 0.76 +0.9 783,299 + BWI76_RS03780 0.81 -2.2 783,313 + BWI76_RS03780 0.83 -0.1 783,321 - BWI76_RS03780 0.84 +0.4 783,346 + BWI76_RS03780 0.88 +0.5 783,346 + BWI76_RS03780 0.88 +0.1 783,351 + BWI76_RS03780 0.89 +1.3 783,396 + -0.4 783,411 + -0.4 783,440 + -2.5 783,441 - -0.2 783,444 + +0.3 783,450 + +1.7 783,450 + +0.3 783,450 + +1.7 783,450 + -0.2 783,452 - -2.4 783,458 - +0.3 783,458 - -1.1 783,458 - +0.5 783,546 - +0.3 783,658 - BWI76_RS03785 0.23 +1.2 783,701 + BWI76_RS03785 0.28 +1.2 783,709 - BWI76_RS03785 0.29 -0.7 783,711 + BWI76_RS03785 0.30 +0.2 783,929 - BWI76_RS03785 0.56 -0.3 784,028 + BWI76_RS03785 0.69 +0.5 784,050 + BWI76_RS03785 0.71 +0.2 784,050 + BWI76_RS03785 0.71 +0.1 784,057 + BWI76_RS03785 0.72 +0.4 784,058 - BWI76_RS03785 0.72 -0.4 784,065 - BWI76_RS03785 0.73 +0.2 784,119 - BWI76_RS03785 0.80 +1.5 784,119 - BWI76_RS03785 0.80 +0.3 784,119 - BWI76_RS03785 0.80 -0.8 784,119 - BWI76_RS03785 0.80 -0.1 784,119 - BWI76_RS03785 0.80 -0.0 784,212 - -1.5 784,301 - +0.7 784,301 - +0.1 784,334 - +0.6 784,427 - BWI76_RS03790 0.13 -0.5 784,457 + BWI76_RS03790 0.20 +0.5 784,504 + BWI76_RS03790 0.30 +0.9 784,512 - BWI76_RS03790 0.32 +1.3 784,692 + BWI76_RS03790 0.71 +0.5 784,725 + BWI76_RS03790 0.79 +0.4 784,939 + -0.4 784,959 + +0.7 784,997 + -0.2 785,090 - -0.6 785,151 + BWI76_RS03795 0.11 +0.5 785,159 - BWI76_RS03795 0.12 +0.5
Or see this region's nucleotide sequence