Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03600 and BWI76_RS03605 are separated by 17 nucleotides BWI76_RS03605 and BWI76_RS03610 are separated by 406 nucleotides BWI76_RS03610 and BWI76_RS03615 overlap by 4 nucleotides BWI76_RS03615 and BWI76_RS03620 are separated by 17 nucleotides
BWI76_RS03600: BWI76_RS03600 - BMC domain-containing protein, at 746,257 to 746,541
_RS03600
BWI76_RS03605: BWI76_RS03605 - BMC domain-containing protein, at 746,559 to 746,837
_RS03605
BWI76_RS03610: BWI76_RS03610 - hypothetical protein, at 747,244 to 747,762
_RS03610
BWI76_RS03615: BWI76_RS03615 - putative transcriptional regulatory protein, at 747,759 to 748,559
_RS03615
BWI76_RS03620: BWI76_RS03620 - TetR family transcriptional regulator, at 748,577 to 749,161
_RS03620
Position (kb) 747
748 Strain fitness (log2 ratio) -2
-1
0
1 at 746.505 kb on - strand, within BWI76_RS03600 at 746.523 kb on + strand at 746.557 kb on - strand at 746.557 kb on - strand at 746.695 kb on + strand, within BWI76_RS03605 at 746.725 kb on - strand, within BWI76_RS03605 at 746.769 kb on - strand, within BWI76_RS03605 at 746.819 kb on + strand at 746.819 kb on + strand at 746.827 kb on - strand at 746.827 kb on - strand at 747.301 kb on + strand, within BWI76_RS03610 at 747.338 kb on + strand, within BWI76_RS03610 at 747.652 kb on + strand, within BWI76_RS03610 at 747.722 kb on + strand at 747.809 kb on + strand at 747.856 kb on - strand, within BWI76_RS03615 at 748.031 kb on + strand, within BWI76_RS03615 at 748.040 kb on + strand, within BWI76_RS03615 at 748.255 kb on + strand, within BWI76_RS03615 at 748.265 kb on + strand, within BWI76_RS03615 at 748.265 kb on + strand, within BWI76_RS03615 at 748.265 kb on + strand, within BWI76_RS03615 at 748.369 kb on + strand, within BWI76_RS03615 at 748.574 kb on + strand at 748.728 kb on + strand, within BWI76_RS03620
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 746,505 - BWI76_RS03600 0.87 -0.8 746,523 + -0.4 746,557 - +1.1 746,557 - -1.9 746,695 + BWI76_RS03605 0.49 +0.0 746,725 - BWI76_RS03605 0.59 -0.1 746,769 - BWI76_RS03605 0.75 -1.5 746,819 + -0.3 746,819 + -0.1 746,827 - +0.3 746,827 - +0.2 747,301 + BWI76_RS03610 0.11 +1.2 747,338 + BWI76_RS03610 0.18 +0.5 747,652 + BWI76_RS03610 0.79 +0.3 747,722 + -0.1 747,809 + +1.4 747,856 - BWI76_RS03615 0.12 +0.2 748,031 + BWI76_RS03615 0.34 +0.1 748,040 + BWI76_RS03615 0.35 +1.0 748,255 + BWI76_RS03615 0.62 -0.9 748,265 + BWI76_RS03615 0.63 -1.4 748,265 + BWI76_RS03615 0.63 -0.1 748,265 + BWI76_RS03615 0.63 -0.5 748,369 + BWI76_RS03615 0.76 -1.0 748,574 + -1.1 748,728 + BWI76_RS03620 0.26 -1.9
Or see this region's nucleotide sequence