Experiment: diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS14120 and BBR_RS14125 are separated by 150 nucleotides BBR_RS14125 and BBR_RS14130 are separated by 90 nucleotides BBR_RS14130 and BBR_RS14135 overlap by 4 nucleotides
BBR_RS14120: BBR_RS14120 - aldo/keto reductase, at 945,348 to 946,259
_RS14120
BBR_RS14125: BBR_RS14125 - phosphopyruvate hydratase, at 946,410 to 947,708
_RS14125
BBR_RS14130: BBR_RS14130 - septum formation initiator family protein, at 947,799 to 948,383
_RS14130
BBR_RS14135: BBR_RS14135 - DUF501 domain-containing protein, at 948,380 to 948,946
_RS14135
Position (kb) 946
947
948 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 945.456 kb on + strand, within BBR_RS14120 at 945.464 kb on - strand, within BBR_RS14120 at 945.472 kb on - strand, within BBR_RS14120 at 945.474 kb on + strand, within BBR_RS14120 at 945.474 kb on + strand, within BBR_RS14120 at 945.479 kb on + strand, within BBR_RS14120 at 945.546 kb on + strand, within BBR_RS14120 at 945.614 kb on + strand, within BBR_RS14120 at 945.632 kb on + strand, within BBR_RS14120 at 945.657 kb on + strand, within BBR_RS14120 at 945.657 kb on + strand, within BBR_RS14120 at 945.665 kb on - strand, within BBR_RS14120 at 945.737 kb on + strand, within BBR_RS14120 at 945.782 kb on - strand, within BBR_RS14120 at 945.797 kb on - strand, within BBR_RS14120 at 945.797 kb on - strand, within BBR_RS14120 at 945.812 kb on - strand, within BBR_RS14120 at 945.840 kb on + strand, within BBR_RS14120 at 945.845 kb on + strand, within BBR_RS14120 at 945.845 kb on + strand, within BBR_RS14120 at 945.853 kb on - strand, within BBR_RS14120 at 945.943 kb on + strand, within BBR_RS14120 at 945.953 kb on + strand, within BBR_RS14120 at 945.979 kb on + strand, within BBR_RS14120 at 945.979 kb on + strand, within BBR_RS14120 at 945.979 kb on + strand, within BBR_RS14120 at 945.987 kb on - strand, within BBR_RS14120 at 945.989 kb on + strand, within BBR_RS14120 at 946.101 kb on - strand, within BBR_RS14120 at 946.101 kb on - strand, within BBR_RS14120 at 946.101 kb on - strand, within BBR_RS14120 at 946.125 kb on - strand, within BBR_RS14120 at 946.131 kb on - strand, within BBR_RS14120 at 946.268 kb on + strand at 946.337 kb on + strand at 946.345 kb on - strand at 946.346 kb on - strand at 947.718 kb on + strand at 948.219 kb on + strand, within BBR_RS14130 at 948.321 kb on + strand, within BBR_RS14130 at 948.353 kb on + strand at 948.353 kb on + strand at 948.358 kb on + strand at 948.366 kb on - strand at 948.378 kb on - strand at 948.403 kb on + strand at 948.403 kb on + strand at 948.411 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse18; day5 remove 945,456 + BBR_RS14120 0.12 +1.7 945,464 - BBR_RS14120 0.13 +2.7 945,472 - BBR_RS14120 0.14 +1.8 945,474 + BBR_RS14120 0.14 +4.5 945,474 + BBR_RS14120 0.14 +2.9 945,479 + BBR_RS14120 0.14 -1.7 945,546 + BBR_RS14120 0.22 +2.4 945,614 + BBR_RS14120 0.29 -2.1 945,632 + BBR_RS14120 0.31 -2.0 945,657 + BBR_RS14120 0.34 -1.6 945,657 + BBR_RS14120 0.34 +0.2 945,665 - BBR_RS14120 0.35 -1.5 945,737 + BBR_RS14120 0.43 -1.6 945,782 - BBR_RS14120 0.48 -0.7 945,797 - BBR_RS14120 0.49 +0.2 945,797 - BBR_RS14120 0.49 +0.3 945,812 - BBR_RS14120 0.51 -0.4 945,840 + BBR_RS14120 0.54 -0.1 945,845 + BBR_RS14120 0.54 -0.1 945,845 + BBR_RS14120 0.54 +0.1 945,853 - BBR_RS14120 0.55 -1.4 945,943 + BBR_RS14120 0.65 -1.5 945,953 + BBR_RS14120 0.66 -0.2 945,979 + BBR_RS14120 0.69 +1.3 945,979 + BBR_RS14120 0.69 +0.2 945,979 + BBR_RS14120 0.69 -1.7 945,987 - BBR_RS14120 0.70 -1.1 945,989 + BBR_RS14120 0.70 -2.0 946,101 - BBR_RS14120 0.83 +1.0 946,101 - BBR_RS14120 0.83 -1.5 946,101 - BBR_RS14120 0.83 +1.0 946,125 - BBR_RS14120 0.85 -0.8 946,131 - BBR_RS14120 0.86 +1.7 946,268 + -1.3 946,337 + -1.8 946,345 - -2.2 946,346 - +2.4 947,718 + +0.7 948,219 + BBR_RS14130 0.72 -1.0 948,321 + BBR_RS14130 0.89 -0.2 948,353 + -1.5 948,353 + +2.9 948,358 + +3.2 948,366 - -1.9 948,378 - +1.0 948,403 + +0.1 948,403 + -1.4 948,411 - +0.3
Or see this region's nucleotide sequence