Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around Dv5SB

Experiment: MoYLS4 with Uranyl Acetate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrrl and rrf are separated by 107 nucleotidesrrf and DVU0257 are separated by 839 nucleotides Dv23SB: rrl - 23S ribosomal RNA (VIMSS-AUTO), at 296,838 to 299,758 rrl Dv5SB: rrf - 5S ribosomal RNA (VIMSS-AUTO), at 299,866 to 299,982 rrf DVU0257: DVU0257 - acetyltransferase, GNAT family (TIGR), at 300,822 to 301,286 DVU0257 Position (kb) 299 300Strain fitness (log2 ratio) -1 0 1at 300.459 kb on + strandat 300.513 kb on + strandat 300.544 kb on + strandat 300.552 kb on - strandat 300.566 kb on + strandat 300.574 kb on - strandat 300.655 kb on - strandat 300.655 kb on - strandat 300.718 kb on + strandat 300.836 kb on + strandat 300.959 kb on + strand, within DVU0257

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Uranyl Acetate 1mM
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300,459 + +0.4
300,513 + +0.2
300,544 + -1.2
300,552 - +0.1
300,566 + +0.3
300,574 - +0.1
300,655 - -0.4
300,655 - +0.0
300,718 + -0.1
300,836 + -0.2
300,959 + DVU0257 0.29 -0.3

Or see this region's nucleotide sequence