Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1399

Experiment: MoYLS4 with Uranyl Acetate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1398 and DVU1399 overlap by 4 nucleotidesDVU1399 and DVU1400 are separated by 89 nucleotides DVU1398: DVU1398 - ISDvu2, transposase OrfB (TIGR), at 1,467,022 to 1,467,864 DVU1398 DVU1399: DVU1399 - ISDvu2, transposase OrfA (TIGR), at 1,467,861 to 1,468,259 DVU1399 DVU1400: DVU1400 - methyl-accepting chemotaxis protein (TIGR), at 1,468,349 to 1,470,241 DVU1400 Position (kb) 1467 1468 1469Strain fitness (log2 ratio) -2 -1 0 1 2at 1466.983 kb on + strandat 1468.285 kb on + strandat 1468.292 kb on + strandat 1468.339 kb on + strandat 1468.347 kb on - strandat 1468.377 kb on - strandat 1468.419 kb on - strandat 1468.425 kb on + strandat 1468.441 kb on + strandat 1468.533 kb on - strandat 1468.544 kb on + strand, within DVU1400at 1468.603 kb on + strand, within DVU1400at 1468.728 kb on + strand, within DVU1400at 1468.792 kb on + strand, within DVU1400at 1468.812 kb on - strand, within DVU1400at 1468.864 kb on + strand, within DVU1400at 1468.869 kb on + strand, within DVU1400at 1468.869 kb on + strand, within DVU1400at 1468.877 kb on + strand, within DVU1400at 1468.879 kb on + strand, within DVU1400at 1468.879 kb on + strand, within DVU1400at 1468.879 kb on + strand, within DVU1400at 1468.885 kb on - strand, within DVU1400at 1468.952 kb on + strand, within DVU1400at 1469.043 kb on + strand, within DVU1400at 1469.053 kb on - strand, within DVU1400at 1469.172 kb on - strand, within DVU1400at 1469.248 kb on + strand, within DVU1400

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Uranyl Acetate 1mM
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1,466,983 + -0.2
1,468,285 + +0.1
1,468,292 + +0.1
1,468,339 + +0.5
1,468,347 - +1.0
1,468,377 - +0.1
1,468,419 - +0.1
1,468,425 + +0.3
1,468,441 + -1.0
1,468,533 - +0.1
1,468,544 + DVU1400 0.10 +2.2
1,468,603 + DVU1400 0.13 +0.3
1,468,728 + DVU1400 0.20 -0.8
1,468,792 + DVU1400 0.23 -0.2
1,468,812 - DVU1400 0.24 -0.0
1,468,864 + DVU1400 0.27 -0.1
1,468,869 + DVU1400 0.27 +0.5
1,468,869 + DVU1400 0.27 -0.3
1,468,877 + DVU1400 0.28 +0.2
1,468,879 + DVU1400 0.28 -0.7
1,468,879 + DVU1400 0.28 +2.3
1,468,879 + DVU1400 0.28 -0.3
1,468,885 - DVU1400 0.28 -0.0
1,468,952 + DVU1400 0.32 -0.2
1,469,043 + DVU1400 0.37 -0.8
1,469,053 - DVU1400 0.37 -0.3
1,469,172 - DVU1400 0.43 -0.3
1,469,248 + DVU1400 0.47 -2.2

Or see this region's nucleotide sequence