Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3316

Experiment: MoYLS4 with Uranyl Acetate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpyrK and pyrD are separated by 8 nucleotidespyrD and DVU3318 are separated by 183 nucleotidesDVU3318 and putA are separated by 94 nucleotides DVU3315: pyrK - dihydroorotate dehydrogenase, electron transfer subunit (TIGR), at 3,493,097 to 3,493,915 pyrK DVU3316: pyrD - dihydroorotate dehydrogenase (TIGR), at 3,493,924 to 3,494,847 pyrD DVU3318: DVU3318 - hypothetical protein (TIGR), at 3,495,031 to 3,495,201 DVU3318 DVU3319: putA - proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (TIGR), at 3,495,296 to 3,498,316 putA Position (kb) 3493 3494 3495Strain fitness (log2 ratio) -1 0 1 2at 3492.984 kb on - strandat 3493.009 kb on + strandat 3493.017 kb on - strandat 3493.033 kb on + strandat 3494.842 kb on + strandat 3495.047 kb on - strandat 3495.075 kb on - strand, within DVU3318at 3495.098 kb on - strand, within DVU3318at 3495.117 kb on - strand, within DVU3318at 3495.118 kb on - strand, within DVU3318at 3495.146 kb on - strand, within DVU3318at 3495.182 kb on - strand, within DVU3318at 3495.230 kb on + strandat 3495.230 kb on + strandat 3495.230 kb on + strandat 3495.238 kb on - strandat 3495.307 kb on - strandat 3495.355 kb on + strandat 3495.396 kb on + strandat 3495.406 kb on + strandat 3495.407 kb on + strandat 3495.407 kb on + strandat 3495.415 kb on - strandat 3495.415 kb on - strandat 3495.417 kb on + strandat 3495.420 kb on - strandat 3495.459 kb on - strandat 3495.472 kb on + strandat 3495.478 kb on + strandat 3495.485 kb on - strandat 3495.494 kb on - strandat 3495.525 kb on + strandat 3495.604 kb on + strand, within putAat 3495.604 kb on + strand, within putAat 3495.607 kb on + strand, within putAat 3495.618 kb on - strand, within putAat 3495.688 kb on - strand, within putAat 3495.797 kb on - strand, within putA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Uranyl Acetate 1mM
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3,492,984 - -0.4
3,493,009 + -0.1
3,493,017 - -0.7
3,493,033 + -0.3
3,494,842 + -0.3
3,495,047 - -0.1
3,495,075 - DVU3318 0.26 -0.3
3,495,098 - DVU3318 0.39 +0.1
3,495,117 - DVU3318 0.50 +0.3
3,495,118 - DVU3318 0.51 -0.0
3,495,146 - DVU3318 0.67 +2.2
3,495,182 - DVU3318 0.88 +0.5
3,495,230 + -0.3
3,495,230 + +0.1
3,495,230 + +0.6
3,495,238 - -0.1
3,495,307 - +0.7
3,495,355 + -1.3
3,495,396 + -0.8
3,495,406 + -0.0
3,495,407 + +0.9
3,495,407 + +0.2
3,495,415 - +0.2
3,495,415 - +1.7
3,495,417 + +0.2
3,495,420 - +1.1
3,495,459 - -0.6
3,495,472 + -0.2
3,495,478 + +0.3
3,495,485 - -0.2
3,495,494 - +0.0
3,495,525 + +0.1
3,495,604 + putA DVU3319 0.10 -0.3
3,495,604 + putA DVU3319 0.10 -0.5
3,495,607 + putA DVU3319 0.10 +0.0
3,495,618 - putA DVU3319 0.11 -0.7
3,495,688 - putA DVU3319 0.13 -0.3
3,495,797 - putA DVU3319 0.17 -0.6

Or see this region's nucleotide sequence