Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3315

Experiment: MoYLS4 with Uranyl Acetate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3314 and pyrK are separated by 380 nucleotidespyrK and pyrD are separated by 8 nucleotides DVU3314: DVU3314 - peptidase, U32 family (TIGR), at 3,490,740 to 3,492,716 DVU3314 DVU3315: pyrK - dihydroorotate dehydrogenase, electron transfer subunit (TIGR), at 3,493,097 to 3,493,915 pyrK DVU3316: pyrD - dihydroorotate dehydrogenase (TIGR), at 3,493,924 to 3,494,847 pyrD Position (kb) 3493 3494Strain fitness (log2 ratio) -1 0 1at 3492.122 kb on + strand, within DVU3314at 3492.193 kb on + strand, within DVU3314at 3492.201 kb on - strand, within DVU3314at 3492.316 kb on + strand, within DVU3314at 3492.379 kb on + strand, within DVU3314at 3492.379 kb on + strand, within DVU3314at 3492.387 kb on - strand, within DVU3314at 3492.413 kb on + strand, within DVU3314at 3492.519 kb on - strandat 3492.552 kb on - strandat 3492.765 kb on + strandat 3492.896 kb on + strandat 3492.984 kb on - strandat 3493.009 kb on + strandat 3493.017 kb on - strandat 3493.033 kb on + strandat 3494.842 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Uranyl Acetate 1mM
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3,492,122 + DVU3314 0.70 +0.7
3,492,193 + DVU3314 0.73 -0.3
3,492,201 - DVU3314 0.74 -0.9
3,492,316 + DVU3314 0.80 +0.1
3,492,379 + DVU3314 0.83 +1.7
3,492,379 + DVU3314 0.83 +0.1
3,492,387 - DVU3314 0.83 +0.7
3,492,413 + DVU3314 0.85 +1.1
3,492,519 - -1.7
3,492,552 - +0.3
3,492,765 + +0.7
3,492,896 + +0.6
3,492,984 - -0.4
3,493,009 + -0.1
3,493,017 - -0.7
3,493,033 + -0.3
3,494,842 + -0.3

Or see this region's nucleotide sequence