Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3168

Experiment: MoYLS4 with Uranyl Acetate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3166 and DVU3167 are separated by 93 nucleotidesDVU3167 and hemL are separated by 67 nucleotideshemL and cbiG are separated by 120 nucleotides DVU3166: DVU3166 - alanyl-tRNA synthetase family protein, putative (TIGR), at 3,322,606 to 3,323,262 DVU3166 DVU3167: DVU3167 - heme biosynthesis protein, putative (TIGR), at 3,323,356 to 3,323,838 DVU3167 DVU3168: hemL - glutamate-1-semialdehyde-2,1-aminomutase (TIGR), at 3,323,906 to 3,325,177 hemL DVU3169: cbiG - cobalamin biosynthesis protein CbiG (TIGR), at 3,325,298 to 3,326,494 cbiG Position (kb) 3323 3324 3325 3326Strain fitness (log2 ratio) -2 -1 0 1at 3323.033 kb on + strand, within DVU3166at 3323.057 kb on + strand, within DVU3166at 3323.065 kb on - strand, within DVU3166at 3323.113 kb on - strand, within DVU3166at 3323.113 kb on - strand, within DVU3166at 3323.194 kb on - strand, within DVU3166at 3323.281 kb on - strandat 3323.873 kb on + strandat 3325.179 kb on - strandat 3325.252 kb on + strandat 3325.252 kb on + strandat 3325.260 kb on - strandat 3325.296 kb on + strandat 3325.315 kb on + strandat 3325.375 kb on + strandat 3325.500 kb on + strand, within cbiGat 3325.526 kb on + strand, within cbiGat 3325.604 kb on + strand, within cbiGat 3325.620 kb on + strand, within cbiGat 3325.648 kb on + strand, within cbiGat 3325.675 kb on - strand, within cbiGat 3325.679 kb on + strand, within cbiGat 3325.687 kb on - strand, within cbiGat 3325.716 kb on - strand, within cbiGat 3325.716 kb on - strand, within cbiGat 3325.754 kb on - strand, within cbiGat 3325.754 kb on - strand, within cbiGat 3325.821 kb on + strand, within cbiGat 3325.821 kb on + strand, within cbiGat 3325.824 kb on - strand, within cbiGat 3325.892 kb on + strand, within cbiGat 3325.892 kb on + strand, within cbiGat 3325.892 kb on + strand, within cbiGat 3325.900 kb on - strand, within cbiGat 3325.905 kb on - strand, within cbiGat 3325.915 kb on - strand, within cbiGat 3325.978 kb on + strand, within cbiGat 3325.984 kb on - strand, within cbiGat 3325.997 kb on + strand, within cbiGat 3326.002 kb on + strand, within cbiGat 3326.039 kb on + strand, within cbiGat 3326.125 kb on - strand, within cbiG

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Uranyl Acetate 1mM
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3,323,033 + DVU3166 0.65 +0.4
3,323,057 + DVU3166 0.69 +0.4
3,323,065 - DVU3166 0.70 -0.5
3,323,113 - DVU3166 0.77 +0.3
3,323,113 - DVU3166 0.77 +0.1
3,323,194 - DVU3166 0.89 +0.4
3,323,281 - -1.1
3,323,873 + -2.0
3,325,179 - +0.3
3,325,252 + +0.4
3,325,252 + -0.4
3,325,260 - +0.4
3,325,296 + -1.5
3,325,315 + +0.1
3,325,375 + -0.3
3,325,500 + cbiG DVU3169 0.17 -0.5
3,325,526 + cbiG DVU3169 0.19 -0.6
3,325,604 + cbiG DVU3169 0.26 -0.1
3,325,620 + cbiG DVU3169 0.27 -0.9
3,325,648 + cbiG DVU3169 0.29 +0.7
3,325,675 - cbiG DVU3169 0.31 +0.1
3,325,679 + cbiG DVU3169 0.32 +0.4
3,325,687 - cbiG DVU3169 0.32 -0.0
3,325,716 - cbiG DVU3169 0.35 -0.2
3,325,716 - cbiG DVU3169 0.35 -0.5
3,325,754 - cbiG DVU3169 0.38 -0.6
3,325,754 - cbiG DVU3169 0.38 -0.8
3,325,821 + cbiG DVU3169 0.44 -1.1
3,325,821 + cbiG DVU3169 0.44 -0.8
3,325,824 - cbiG DVU3169 0.44 -0.2
3,325,892 + cbiG DVU3169 0.50 -0.1
3,325,892 + cbiG DVU3169 0.50 -0.2
3,325,892 + cbiG DVU3169 0.50 -0.1
3,325,900 - cbiG DVU3169 0.50 +0.2
3,325,905 - cbiG DVU3169 0.51 -0.2
3,325,915 - cbiG DVU3169 0.52 -0.9
3,325,978 + cbiG DVU3169 0.57 +0.2
3,325,984 - cbiG DVU3169 0.57 -0.7
3,325,997 + cbiG DVU3169 0.58 -0.6
3,326,002 + cbiG DVU3169 0.59 -0.2
3,326,039 + cbiG DVU3169 0.62 +0.2
3,326,125 - cbiG DVU3169 0.69 +0.7

Or see this region's nucleotide sequence