Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3122

Experiment: MoYLS4 with Uranyl Acetate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3121 and DVU3122 are separated by 29 nucleotidesDVU3122 and DVU3123 are separated by 161 nucleotides DVU3121: DVU3121 - aminotransferase, class V (TIGR), at 3,269,775 to 3,270,905 DVU3121 DVU3122: DVU3122 - hypothetical protein (TIGR), at 3,270,935 to 3,271,042 DVU3122 DVU3123: DVU3123 - HD domain protein (TIGR), at 3,271,204 to 3,271,899 DVU3123 Position (kb) 3270 3271 3272Strain fitness (log2 ratio) -2 -1 0 1 2at 3270.060 kb on + strand, within DVU3121at 3270.096 kb on + strand, within DVU3121at 3270.096 kb on + strand, within DVU3121at 3270.115 kb on + strand, within DVU3121at 3270.115 kb on + strand, within DVU3121at 3270.123 kb on - strand, within DVU3121at 3270.123 kb on - strand, within DVU3121at 3270.144 kb on - strand, within DVU3121at 3270.169 kb on + strand, within DVU3121at 3270.179 kb on + strand, within DVU3121at 3270.182 kb on - strand, within DVU3121at 3270.214 kb on + strand, within DVU3121at 3270.232 kb on + strand, within DVU3121at 3270.232 kb on + strand, within DVU3121at 3270.235 kb on - strand, within DVU3121at 3270.240 kb on - strand, within DVU3121at 3270.253 kb on + strand, within DVU3121at 3270.280 kb on - strand, within DVU3121at 3270.294 kb on + strand, within DVU3121at 3270.312 kb on - strand, within DVU3121at 3270.342 kb on - strand, within DVU3121at 3270.384 kb on - strand, within DVU3121at 3270.389 kb on - strand, within DVU3121at 3270.391 kb on - strand, within DVU3121at 3270.439 kb on + strand, within DVU3121at 3270.509 kb on + strand, within DVU3121at 3270.509 kb on + strand, within DVU3121at 3270.553 kb on - strand, within DVU3121at 3270.575 kb on - strand, within DVU3121at 3270.575 kb on - strand, within DVU3121at 3270.597 kb on + strand, within DVU3121at 3270.658 kb on + strand, within DVU3121at 3270.666 kb on - strand, within DVU3121at 3270.692 kb on - strand, within DVU3121at 3270.705 kb on + strand, within DVU3121at 3270.713 kb on + strand, within DVU3121at 3270.726 kb on + strand, within DVU3121at 3270.735 kb on + strand, within DVU3121at 3270.805 kb on + strandat 3270.822 kb on - strandat 3270.916 kb on + strandat 3270.916 kb on + strandat 3270.923 kb on + strandat 3270.924 kb on - strandat 3270.928 kb on + strandat 3270.931 kb on - strandat 3271.214 kb on - strandat 3271.357 kb on + strand, within DVU3123at 3271.389 kb on + strand, within DVU3123at 3271.474 kb on - strand, within DVU3123at 3271.514 kb on + strand, within DVU3123at 3271.522 kb on - strand, within DVU3123at 3271.551 kb on - strand, within DVU3123at 3271.682 kb on - strand, within DVU3123at 3271.682 kb on - strand, within DVU3123at 3271.743 kb on + strand, within DVU3123at 3271.767 kb on + strand, within DVU3123at 3271.821 kb on + strand, within DVU3123at 3271.897 kb on - strandat 3272.005 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Uranyl Acetate 1mM
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3,270,060 + DVU3121 0.25 +0.2
3,270,096 + DVU3121 0.28 +0.3
3,270,096 + DVU3121 0.28 -0.1
3,270,115 + DVU3121 0.30 +0.2
3,270,115 + DVU3121 0.30 +0.4
3,270,123 - DVU3121 0.31 +0.3
3,270,123 - DVU3121 0.31 -1.1
3,270,144 - DVU3121 0.33 -1.9
3,270,169 + DVU3121 0.35 -1.1
3,270,179 + DVU3121 0.36 +0.0
3,270,182 - DVU3121 0.36 +1.0
3,270,214 + DVU3121 0.39 -1.2
3,270,232 + DVU3121 0.40 -0.6
3,270,232 + DVU3121 0.40 -0.1
3,270,235 - DVU3121 0.41 +2.0
3,270,240 - DVU3121 0.41 -0.1
3,270,253 + DVU3121 0.42 -0.1
3,270,280 - DVU3121 0.45 +0.8
3,270,294 + DVU3121 0.46 +0.7
3,270,312 - DVU3121 0.47 -0.1
3,270,342 - DVU3121 0.50 -0.6
3,270,384 - DVU3121 0.54 -0.2
3,270,389 - DVU3121 0.54 -0.1
3,270,391 - DVU3121 0.54 +0.0
3,270,439 + DVU3121 0.59 +0.2
3,270,509 + DVU3121 0.65 -1.2
3,270,509 + DVU3121 0.65 +0.3
3,270,553 - DVU3121 0.69 +0.8
3,270,575 - DVU3121 0.71 +0.9
3,270,575 - DVU3121 0.71 +2.7
3,270,597 + DVU3121 0.73 +0.2
3,270,658 + DVU3121 0.78 -0.3
3,270,666 - DVU3121 0.79 +0.3
3,270,692 - DVU3121 0.81 +0.4
3,270,705 + DVU3121 0.82 +0.0
3,270,713 + DVU3121 0.83 +0.2
3,270,726 + DVU3121 0.84 -0.2
3,270,735 + DVU3121 0.85 +0.3
3,270,805 + +0.3
3,270,822 - +0.7
3,270,916 + +0.1
3,270,916 + -0.3
3,270,923 + +0.1
3,270,924 - +0.1
3,270,928 + +0.1
3,270,931 - +0.3
3,271,214 - +0.3
3,271,357 + DVU3123 0.22 -1.6
3,271,389 + DVU3123 0.27 +0.9
3,271,474 - DVU3123 0.39 +0.8
3,271,514 + DVU3123 0.45 -0.8
3,271,522 - DVU3123 0.46 -0.0
3,271,551 - DVU3123 0.50 -0.1
3,271,682 - DVU3123 0.69 +0.1
3,271,682 - DVU3123 0.69 +0.4
3,271,743 + DVU3123 0.77 +1.1
3,271,767 + DVU3123 0.81 -1.1
3,271,821 + DVU3123 0.89 +0.3
3,271,897 - +0.0
3,272,005 + +0.4

Or see this region's nucleotide sequence