Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2941

Experiment: MoYLS4 with Uranyl Acetate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2939 and DVU2940 are separated by 286 nucleotidesDVU2940 and DVU2941 are separated by 131 nucleotidesDVU2941 and purB are separated by 99 nucleotides DVU2939: DVU2939 - conserved hypothetical protein (TIGR), at 3,044,106 to 3,044,993 DVU2939 DVU2940: DVU2940 - hypothetical protein (TIGR), at 3,045,280 to 3,045,390 DVU2940 DVU2941: DVU2941 - conserved hypothetical protein (TIGR), at 3,045,522 to 3,045,821 DVU2941 DVU2942: purB - adenylosuccinate lyase (TIGR), at 3,045,921 to 3,047,213 purB Position (kb) 3045 3046Strain fitness (log2 ratio) -1 0 1 2at 3044.565 kb on + strand, within DVU2939at 3044.565 kb on + strand, within DVU2939at 3044.565 kb on + strand, within DVU2939at 3044.573 kb on - strand, within DVU2939at 3044.586 kb on - strand, within DVU2939at 3044.645 kb on + strand, within DVU2939at 3044.653 kb on - strand, within DVU2939at 3044.721 kb on - strand, within DVU2939at 3044.721 kb on - strand, within DVU2939at 3044.736 kb on - strand, within DVU2939at 3044.736 kb on - strand, within DVU2939at 3044.880 kb on + strand, within DVU2939at 3044.883 kb on - strand, within DVU2939at 3044.890 kb on - strand, within DVU2939at 3045.026 kb on + strandat 3045.046 kb on - strandat 3045.100 kb on + strandat 3045.191 kb on + strandat 3045.199 kb on - strandat 3045.214 kb on + strandat 3045.826 kb on + strandat 3045.826 kb on + strandat 3045.826 kb on + strandat 3045.826 kb on + strandat 3045.826 kb on + strandat 3045.826 kb on + strandat 3045.845 kb on - strandat 3045.845 kb on - strandat 3045.887 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Uranyl Acetate 1mM
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3,044,565 + DVU2939 0.52 -0.2
3,044,565 + DVU2939 0.52 -0.2
3,044,565 + DVU2939 0.52 +0.3
3,044,573 - DVU2939 0.53 +0.1
3,044,586 - DVU2939 0.54 -0.2
3,044,645 + DVU2939 0.61 +0.8
3,044,653 - DVU2939 0.62 -0.5
3,044,721 - DVU2939 0.69 -0.4
3,044,721 - DVU2939 0.69 +1.3
3,044,736 - DVU2939 0.71 +0.0
3,044,736 - DVU2939 0.71 -0.2
3,044,880 + DVU2939 0.87 -0.5
3,044,883 - DVU2939 0.88 -0.3
3,044,890 - DVU2939 0.88 -0.5
3,045,026 + +1.7
3,045,046 - -0.3
3,045,100 + +0.5
3,045,191 + +0.6
3,045,199 - -0.4
3,045,214 + -0.4
3,045,826 + +0.7
3,045,826 + +1.7
3,045,826 + +0.4
3,045,826 + -0.3
3,045,826 + -0.5
3,045,826 + +0.3
3,045,845 - -0.4
3,045,845 - -0.1
3,045,887 + +2.3

Or see this region's nucleotide sequence