Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2857

Experiment: MoYLS4 with Uranyl Acetate 1mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU2856 and DVU2857 are separated by 199 nucleotidesDVU2857 and DVU2858 overlap by 1 nucleotidesDVU2858 and DVU2859 are separated by 49 nucleotides DVU2856: DVU2856 - conserved domain protein (TIGR), at 2,956,426 to 2,957,916 DVU2856 DVU2857: DVU2857 - conserved hypothetical protein (TIGR), at 2,958,116 to 2,958,376 DVU2857 DVU2858: DVU2858 - tail tube protein, putative (TIGR), at 2,958,376 to 2,958,741 DVU2858 DVU2859: DVU2859 - tail sheath protein, putative (TIGR), at 2,958,791 to 2,960,254 DVU2859 Position (kb) 2958 2959Strain fitness (log2 ratio) -2 -1 0 1at 2957.156 kb on + strand, within DVU2856at 2957.201 kb on - strand, within DVU2856at 2957.211 kb on - strand, within DVU2856at 2957.211 kb on - strand, within DVU2856at 2957.264 kb on + strand, within DVU2856at 2957.264 kb on + strand, within DVU2856at 2957.264 kb on + strand, within DVU2856at 2957.270 kb on + strand, within DVU2856at 2957.272 kb on - strand, within DVU2856at 2957.365 kb on + strand, within DVU2856at 2957.380 kb on - strand, within DVU2856at 2957.390 kb on + strand, within DVU2856at 2957.392 kb on + strand, within DVU2856at 2957.495 kb on - strand, within DVU2856at 2957.495 kb on - strand, within DVU2856at 2957.495 kb on - strand, within DVU2856at 2957.568 kb on + strand, within DVU2856at 2957.576 kb on - strand, within DVU2856at 2958.121 kb on + strandat 2959.157 kb on + strand, within DVU2859at 2959.189 kb on - strand, within DVU2859

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Uranyl Acetate 1mM
remove
2,957,156 + DVU2856 0.49 +0.1
2,957,201 - DVU2856 0.52 -0.7
2,957,211 - DVU2856 0.53 +0.0
2,957,211 - DVU2856 0.53 -1.3
2,957,264 + DVU2856 0.56 +0.3
2,957,264 + DVU2856 0.56 -0.6
2,957,264 + DVU2856 0.56 +0.3
2,957,270 + DVU2856 0.57 +0.3
2,957,272 - DVU2856 0.57 -0.3
2,957,365 + DVU2856 0.63 -0.3
2,957,380 - DVU2856 0.64 -0.4
2,957,390 + DVU2856 0.65 +0.4
2,957,392 + DVU2856 0.65 +0.1
2,957,495 - DVU2856 0.72 -1.0
2,957,495 - DVU2856 0.72 -0.1
2,957,495 - DVU2856 0.72 -0.0
2,957,568 + DVU2856 0.77 +0.5
2,957,576 - DVU2856 0.77 +0.9
2,958,121 + -1.9
2,959,157 + DVU2859 0.25 +1.2
2,959,189 - DVU2859 0.27 -1.1

Or see this region's nucleotide sequence