Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2254

Experiment: MoYLS4 with Uranyl Acetate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaA-2 and DVU2253 are separated by 104 nucleotidesDVU2253 and thyX are separated by 32 nucleotidesthyX and ruvB are separated by 17 nucleotidesruvB and ruvA are separated by 0 nucleotides DVU2252: dnaA-2 - chromosomal replication initiator protein DnaA (TIGR), at 2,347,717 to 2,349,192 dnaA-2 DVU2253: DVU2253 - hypothetical protein (TIGR), at 2,349,297 to 2,349,479 DVU2253 DVU2254: thyX - thymidylate synthase ThyX (TIGR), at 2,349,512 to 2,350,249 thyX DVU2255: ruvB - Holliday junction DNA helicase RuvB (TIGR), at 2,350,267 to 2,351,229 ruvB DVU2256: ruvA - Holliday junction DNA helicase RuvA (TIGR), at 2,351,230 to 2,351,838 ruvA Position (kb) 2349 2350 2351Strain fitness (log2 ratio) -2 -1 0 1at 2349.481 kb on - strandat 2350.259 kb on - strandat 2350.259 kb on - strandat 2350.259 kb on - strandat 2350.259 kb on - strandat 2350.259 kb on - strandat 2350.259 kb on - strandat 2350.297 kb on - strandat 2350.768 kb on - strand, within ruvBat 2350.787 kb on + strand, within ruvBat 2350.795 kb on - strand, within ruvBat 2350.893 kb on - strand, within ruvBat 2350.987 kb on - strand, within ruvBat 2351.245 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Uranyl Acetate 1mM
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2,349,481 - -1.6
2,350,259 - -1.8
2,350,259 - -0.3
2,350,259 - +0.2
2,350,259 - -1.6
2,350,259 - +0.0
2,350,259 - -0.4
2,350,297 - +0.7
2,350,768 - ruvB DVU2255 0.52 -1.0
2,350,787 + ruvB DVU2255 0.54 -1.3
2,350,795 - ruvB DVU2255 0.55 +1.1
2,350,893 - ruvB DVU2255 0.65 +0.1
2,350,987 - ruvB DVU2255 0.75 -0.6
2,351,245 - -0.1

Or see this region's nucleotide sequence