Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2052

Experiment: MoYLS4 with Uranyl Acetate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2051 and tRNA-Met are separated by 220 nucleotidestRNA-Met and dmt are separated by 102 nucleotidesdmt and DVU2053 are separated by 229 nucleotidesDVU2053 and DVU2054 overlap by 7 nucleotides DVU2051: DVU2051 - hypothetical protein (TIGR), at 2,127,643 to 2,128,941 DVU2051 DVU_tRNA-Met-4: tRNA-Met - tRNA with anticodon CAT for Met (VIMSS-AUTO), at 2,129,162 to 2,129,238 tRNA-Met DVU2052: dmt - glycosyl transferase, group 2 family protein (TIGR), at 2,129,341 to 2,130,063 dmt DVU2053: DVU2053 - membrane protein, putative (TIGR), at 2,130,293 to 2,130,973 DVU2053 DVU2054: DVU2054 - hypothetical protein (TIGR), at 2,130,967 to 2,131,065 DVU2054 Position (kb) 2129 2130 2131Strain fitness (log2 ratio) -1 0 1 2at 2128.493 kb on + strand, within DVU2051at 2128.500 kb on + strand, within DVU2051at 2128.739 kb on + strand, within DVU2051at 2128.824 kb on - strandat 2129.077 kb on + strandat 2130.052 kb on - strandat 2130.088 kb on - strandat 2130.158 kb on - strandat 2131.021 kb on + strand, within DVU2054at 2131.063 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Uranyl Acetate 1mM
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2,128,493 + DVU2051 0.65 -0.2
2,128,500 + DVU2051 0.66 -0.6
2,128,739 + DVU2051 0.84 +0.3
2,128,824 - +0.3
2,129,077 + +2.3
2,130,052 - +1.3
2,130,088 - +0.1
2,130,158 - -1.1
2,131,021 + DVU2054 0.55 +0.1
2,131,063 - +0.7

Or see this region's nucleotide sequence