Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1867

Experiment: MoYLS4 with Uranyl Acetate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntihfB and DVU1865 overlap by 14 nucleotidesDVU1865 and DVU1866 are separated by 51 nucleotidesDVU1866 and dapF are separated by 25 nucleotidesdapF and dapA are separated by 55 nucleotides DVU1864: ihfB - DNA-binding protein HU, beta subunit, putative (TIGR), at 1,931,333 to 1,931,614 ihfB DVU1865: DVU1865 - hypothetical protein (TIGR), at 1,931,601 to 1,931,741 DVU1865 DVU1866: DVU1866 - hypothetical protein (TIGR), at 1,931,793 to 1,932,494 DVU1866 DVU1867: dapF - diaminopimelate epimerase (TIGR), at 1,932,520 to 1,933,368 dapF DVU1868: dapA - dihydrodipicolinate synthase (TIGR), at 1,933,424 to 1,934,302 dapA Position (kb) 1932 1933 1934Strain fitness (log2 ratio) -1 0 1at 1931.608 kb on + strandat 1931.729 kb on - strandat 1931.773 kb on + strandat 1931.864 kb on + strand, within DVU1866at 1932.025 kb on + strand, within DVU1866at 1932.151 kb on - strand, within DVU1866at 1932.161 kb on - strand, within DVU1866at 1932.174 kb on + strand, within DVU1866at 1932.246 kb on + strand, within DVU1866at 1932.374 kb on - strand, within DVU1866at 1932.466 kb on + strandat 1932.511 kb on - strandat 1933.332 kb on + strandat 1933.360 kb on - strandat 1933.362 kb on + strandat 1934.305 kb on + strandat 1934.305 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Uranyl Acetate 1mM
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1,931,608 + -1.0
1,931,729 - -0.1
1,931,773 + -0.5
1,931,864 + DVU1866 0.10 -0.3
1,932,025 + DVU1866 0.33 -0.7
1,932,151 - DVU1866 0.51 -0.2
1,932,161 - DVU1866 0.52 -0.3
1,932,174 + DVU1866 0.54 -0.2
1,932,246 + DVU1866 0.65 +0.2
1,932,374 - DVU1866 0.83 -0.3
1,932,466 + -0.2
1,932,511 - -1.6
1,933,332 + -0.3
1,933,360 - +0.3
1,933,362 + -0.1
1,934,305 + +0.1
1,934,305 - -0.3

Or see this region's nucleotide sequence