Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1655

Experiment: MoYLS4 with Uranyl Acetate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntxerD and aspC4 are separated by 273 nucleotidesaspC4 and folK are separated by 74 nucleotidesfolK and DVU1657 are separated by 24 nucleotides DVU1654: xerD - site-specific recombinase, phage integrase family (TIGR), at 1,735,437 to 1,736,321 xerD DVU1655: aspC4 - aminotransferase, classes I and II (TIGR), at 1,736,595 to 1,737,761 aspC4 DVU1656: folK - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (TIGR), at 1,737,836 to 1,738,261 folK DVU1657: DVU1657 - hypothetical protein (TIGR), at 1,738,286 to 1,738,585 DVU1657 Position (kb) 1736 1737 1738Strain fitness (log2 ratio) -1 0 1at 1735.617 kb on + strand, within xerDat 1735.656 kb on - strand, within xerDat 1735.665 kb on + strand, within xerDat 1735.674 kb on + strand, within xerDat 1735.730 kb on - strand, within xerDat 1735.789 kb on - strand, within xerDat 1735.897 kb on - strand, within xerDat 1735.964 kb on + strand, within xerDat 1736.148 kb on - strand, within xerDat 1736.246 kb on + strandat 1736.274 kb on - strandat 1736.290 kb on - strandat 1736.373 kb on - strandat 1736.447 kb on + strandat 1736.476 kb on - strandat 1736.491 kb on + strandat 1738.685 kb on + strandat 1738.751 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Uranyl Acetate 1mM
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1,735,617 + xerD DVU1654 0.20 +1.7
1,735,656 - xerD DVU1654 0.25 -0.5
1,735,665 + xerD DVU1654 0.26 -0.1
1,735,674 + xerD DVU1654 0.27 +0.7
1,735,730 - xerD DVU1654 0.33 +0.3
1,735,789 - xerD DVU1654 0.40 -1.3
1,735,897 - xerD DVU1654 0.52 +0.7
1,735,964 + xerD DVU1654 0.60 -1.1
1,736,148 - xerD DVU1654 0.80 +0.1
1,736,246 + -0.6
1,736,274 - -0.6
1,736,290 - -0.2
1,736,373 - -0.2
1,736,447 + -0.2
1,736,476 - +0.3
1,736,491 + +0.7
1,738,685 + +0.7
1,738,751 + -0.3

Or see this region's nucleotide sequence