Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1579

Experiment: MoYLS4 with Uranyl Acetate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1578 and cysS are separated by 5 nucleotidescysS and rpiB are separated by 16 nucleotidesrpiB and DVU1581 are separated by 13 nucleotidesDVU1581 and DVU1582 are separated by 14 nucleotides DVU1578: DVU1578 - TPR domain protein (TIGR), at 1,659,921 to 1,661,366 DVU1578 DVU1579: cysS - cysteinyl-tRNA synthetase (TIGR), at 1,661,372 to 1,662,829 cysS DVU1580: rpiB - ribose 5-phosphate isomerase, putative (TIGR), at 1,662,846 to 1,663,289 rpiB DVU1581: DVU1581 - hypothetical protein (TIGR), at 1,663,303 to 1,663,653 DVU1581 DVU1582: DVU1582 - hypothetical protein (TIGR), at 1,663,668 to 1,664,507 DVU1582 Position (kb) 1661 1662 1663Strain fitness (log2 ratio) -3 -2 -1 0 1at 1660.398 kb on + strand, within DVU1578at 1660.406 kb on - strand, within DVU1578at 1660.414 kb on + strand, within DVU1578at 1660.528 kb on - strand, within DVU1578at 1660.639 kb on - strand, within DVU1578at 1660.700 kb on - strand, within DVU1578at 1660.734 kb on - strand, within DVU1578at 1660.794 kb on - strand, within DVU1578at 1660.870 kb on + strand, within DVU1578at 1660.923 kb on + strand, within DVU1578at 1661.089 kb on + strand, within DVU1578at 1661.250 kb on + strandat 1663.301 kb on + strandat 1663.309 kb on - strandat 1663.487 kb on + strand, within DVU1581at 1663.515 kb on + strand, within DVU1581at 1663.523 kb on - strand, within DVU1581at 1663.660 kb on - strandat 1663.718 kb on + strandat 1663.726 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Uranyl Acetate 1mM
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1,660,398 + DVU1578 0.33 -0.5
1,660,406 - DVU1578 0.34 -0.6
1,660,414 + DVU1578 0.34 -2.4
1,660,528 - DVU1578 0.42 -1.0
1,660,639 - DVU1578 0.50 -1.4
1,660,700 - DVU1578 0.54 -0.5
1,660,734 - DVU1578 0.56 -1.3
1,660,794 - DVU1578 0.60 -0.5
1,660,870 + DVU1578 0.66 -3.1
1,660,923 + DVU1578 0.69 -0.3
1,661,089 + DVU1578 0.81 +0.1
1,661,250 + -1.0
1,663,301 + -0.5
1,663,309 - -0.6
1,663,487 + DVU1581 0.52 -0.7
1,663,515 + DVU1581 0.60 +0.0
1,663,523 - DVU1581 0.63 -0.6
1,663,660 - -0.5
1,663,718 + +0.3
1,663,726 - -0.3

Or see this region's nucleotide sequence