Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1422

Experiment: MoYLS4 with Uranyl Acetate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1420 and DVU1421 are separated by 199 nucleotidesDVU1421 and DVU1422 are separated by 64 nucleotidesDVU1422 and lpdA are separated by 102 nucleotides DVU1420: DVU1420 - Hpt domain protein (TIGR), at 1,494,284 to 1,494,655 DVU1420 DVU1421: DVU1421 - hypothetical protein (TIGR), at 1,494,855 to 1,495,316 DVU1421 DVU1422: DVU1422 - OmpA family protein (TIGR), at 1,495,381 to 1,496,454 DVU1422 DVU1423: lpdA - 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase (TIGR), at 1,496,557 to 1,497,927 lpdA Position (kb) 1495 1496 1497Strain fitness (log2 ratio) -1 0 1at 1494.693 kb on - strandat 1494.732 kb on - strandat 1494.732 kb on - strandat 1494.732 kb on - strandat 1494.736 kb on + strandat 1494.927 kb on + strand, within DVU1421at 1495.123 kb on - strand, within DVU1421at 1495.154 kb on - strand, within DVU1421at 1495.159 kb on - strand, within DVU1421at 1495.371 kb on + strandat 1495.521 kb on - strand, within DVU1422at 1495.835 kb on + strand, within DVU1422at 1496.553 kb on - strandat 1496.553 kb on - strandat 1496.617 kb on + strandat 1496.784 kb on - strand, within lpdAat 1497.034 kb on - strand, within lpdAat 1497.041 kb on + strand, within lpdAat 1497.087 kb on + strand, within lpdAat 1497.095 kb on - strand, within lpdAat 1497.176 kb on - strand, within lpdAat 1497.298 kb on - strand, within lpdAat 1497.298 kb on - strand, within lpdAat 1497.319 kb on + strand, within lpdAat 1497.383 kb on - strand, within lpdAat 1497.451 kb on + strand, within lpdA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Uranyl Acetate 1mM
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1,494,693 - -0.3
1,494,732 - +0.3
1,494,732 - -0.4
1,494,732 - +0.2
1,494,736 + -0.1
1,494,927 + DVU1421 0.16 -0.2
1,495,123 - DVU1421 0.58 -0.2
1,495,154 - DVU1421 0.65 +0.8
1,495,159 - DVU1421 0.66 -0.4
1,495,371 + +1.6
1,495,521 - DVU1422 0.13 +0.1
1,495,835 + DVU1422 0.42 +1.6
1,496,553 - -0.2
1,496,553 - +0.2
1,496,617 + -0.4
1,496,784 - lpdA DVU1423 0.17 -0.4
1,497,034 - lpdA DVU1423 0.35 -0.9
1,497,041 + lpdA DVU1423 0.35 +0.1
1,497,087 + lpdA DVU1423 0.39 +0.1
1,497,095 - lpdA DVU1423 0.39 +0.1
1,497,176 - lpdA DVU1423 0.45 -0.3
1,497,298 - lpdA DVU1423 0.54 -0.4
1,497,298 - lpdA DVU1423 0.54 -0.8
1,497,319 + lpdA DVU1423 0.56 -0.9
1,497,383 - lpdA DVU1423 0.60 +1.1
1,497,451 + lpdA DVU1423 0.65 +0.0

Or see this region's nucleotide sequence