Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1406

Experiment: MoYLS4 with Uranyl Acetate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpflA and DVU1405 overlap by 17 nucleotidesDVU1405 and purM are separated by 10 nucleotidespurM and DVU1407 are separated by 316 nucleotides DVU1404: pflA - radical SAM domain protein (TIGR), at 1,473,006 to 1,474,112 pflA DVU1405: DVU1405 - hypothetical protein (TIGR), at 1,474,096 to 1,474,599 DVU1405 DVU1406: purM - phosphoribosylformylglycinamidine cyclo-ligase (TIGR), at 1,474,610 to 1,475,662 purM DVU1407: DVU1407 - radical SAM domain protein (TIGR), at 1,475,979 to 1,477,454 DVU1407 Position (kb) 1474 1475 1476Strain fitness (log2 ratio) -1 0 1 2at 1473.610 kb on - strand, within pflAat 1473.645 kb on + strand, within pflAat 1473.668 kb on + strand, within pflAat 1473.677 kb on - strand, within pflAat 1473.766 kb on - strand, within pflAat 1473.805 kb on + strand, within pflAat 1473.813 kb on - strand, within pflAat 1473.813 kb on - strand, within pflAat 1473.813 kb on - strand, within pflAat 1473.870 kb on + strand, within pflAat 1473.870 kb on + strand, within pflAat 1473.878 kb on - strand, within pflAat 1473.941 kb on - strand, within pflAat 1473.955 kb on + strand, within pflAat 1473.963 kb on - strand, within pflAat 1474.044 kb on + strandat 1474.079 kb on + strandat 1474.097 kb on - strandat 1474.196 kb on - strand, within DVU1405at 1474.203 kb on - strand, within DVU1405at 1474.203 kb on - strand, within DVU1405at 1474.203 kb on - strand, within DVU1405at 1474.320 kb on + strand, within DVU1405at 1474.342 kb on + strand, within DVU1405at 1474.347 kb on + strand, within DVU1405at 1474.423 kb on + strand, within DVU1405at 1474.423 kb on + strand, within DVU1405at 1474.480 kb on - strand, within DVU1405at 1474.534 kb on + strand, within DVU1405at 1475.656 kb on + strandat 1475.740 kb on + strandat 1475.781 kb on - strandat 1475.803 kb on + strandat 1475.861 kb on + strandat 1475.897 kb on - strandat 1475.990 kb on - strandat 1476.081 kb on + strandat 1476.101 kb on + strandat 1476.176 kb on + strand, within DVU1407at 1476.275 kb on + strand, within DVU1407at 1476.275 kb on + strand, within DVU1407at 1476.299 kb on + strand, within DVU1407at 1476.299 kb on + strand, within DVU1407

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Uranyl Acetate 1mM
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1,473,610 - pflA DVU1404 0.55 -0.3
1,473,645 + pflA DVU1404 0.58 -0.1
1,473,668 + pflA DVU1404 0.60 +0.8
1,473,677 - pflA DVU1404 0.61 +0.4
1,473,766 - pflA DVU1404 0.69 -0.9
1,473,805 + pflA DVU1404 0.72 -1.0
1,473,813 - pflA DVU1404 0.73 +1.2
1,473,813 - pflA DVU1404 0.73 +0.2
1,473,813 - pflA DVU1404 0.73 -1.2
1,473,870 + pflA DVU1404 0.78 +0.9
1,473,870 + pflA DVU1404 0.78 +0.3
1,473,878 - pflA DVU1404 0.79 +1.7
1,473,941 - pflA DVU1404 0.84 +0.7
1,473,955 + pflA DVU1404 0.86 +0.4
1,473,963 - pflA DVU1404 0.86 -0.3
1,474,044 + +1.3
1,474,079 + +0.4
1,474,097 - +0.1
1,474,196 - DVU1405 0.20 +0.1
1,474,203 - DVU1405 0.21 -0.5
1,474,203 - DVU1405 0.21 +0.7
1,474,203 - DVU1405 0.21 -0.1
1,474,320 + DVU1405 0.44 -0.0
1,474,342 + DVU1405 0.49 -0.0
1,474,347 + DVU1405 0.50 -0.6
1,474,423 + DVU1405 0.65 -0.0
1,474,423 + DVU1405 0.65 +0.2
1,474,480 - DVU1405 0.76 +0.2
1,474,534 + DVU1405 0.87 -0.1
1,475,656 + +2.0
1,475,740 + +0.1
1,475,781 - -0.3
1,475,803 + +0.2
1,475,861 + +0.3
1,475,897 - -0.6
1,475,990 - -0.1
1,476,081 + +0.3
1,476,101 + +0.1
1,476,176 + DVU1407 0.13 +0.6
1,476,275 + DVU1407 0.20 +1.4
1,476,275 + DVU1407 0.20 +0.3
1,476,299 + DVU1407 0.22 +0.6
1,476,299 + DVU1407 0.22 -1.5

Or see this region's nucleotide sequence