Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1361

Experiment: MoYLS4 with Uranyl Acetate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgalE and lpxB are separated by 81 nucleotideslpxB and DVU1362 are separated by 1 nucleotidesDVU1362 and rfbD are separated by 27 nucleotides DVU1360: galE - UDP-glucose 4-epimerase (TIGR), at 1,438,843 to 1,439,838 galE DVU1361: lpxB - lipid A disaccharide synthase (TIGR), at 1,439,920 to 1,441,050 lpxB DVU1362: DVU1362 - membrane protein, putative (TIGR), at 1,441,052 to 1,442,020 DVU1362 DVU1363: rfbD - dTDP-4-dehydrorhamnose reductase (TIGR), at 1,442,048 to 1,442,923 rfbD Position (kb) 1439 1440 1441 1442Strain fitness (log2 ratio) -1 0 1 2at 1438.942 kb on - strandat 1439.185 kb on - strand, within galEat 1439.423 kb on - strand, within galEat 1439.473 kb on - strand, within galEat 1439.491 kb on + strand, within galEat 1439.832 kb on + strandat 1439.832 kb on + strandat 1439.832 kb on + strandat 1439.840 kb on - strandat 1439.859 kb on + strandat 1439.859 kb on + strandat 1439.867 kb on - strandat 1439.867 kb on - strandat 1441.313 kb on - strand, within DVU1362

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Uranyl Acetate 1mM
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1,438,942 - +2.7
1,439,185 - galE DVU1360 0.34 -1.2
1,439,423 - galE DVU1360 0.58 +0.7
1,439,473 - galE DVU1360 0.63 -1.5
1,439,491 + galE DVU1360 0.65 +0.3
1,439,832 + +0.6
1,439,832 + -0.1
1,439,832 + -0.5
1,439,840 - -0.8
1,439,859 + -0.0
1,439,859 + -1.3
1,439,867 - +0.0
1,439,867 - -0.7
1,441,313 - DVU1362 0.27 +0.1

Or see this region's nucleotide sequence