Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1282

Experiment: MoYLS4 with Uranyl Acetate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1280 and DVU1281 are separated by 1 nucleotidesDVU1281 and glmM are separated by 59 nucleotidesglmM and galU are separated by 37 nucleotidesgalU and priA are separated by 75 nucleotides DVU1280: DVU1280 - conserved hypothetical protein TIGR00159 (TIGR), at 1,372,822 to 1,373,568 DVU1280 DVU1281: DVU1281 - conserved hypothetical protein (TIGR), at 1,373,570 to 1,374,472 DVU1281 DVU1282: glmM - phosphoglucosamine mutase (TIGR), at 1,374,532 to 1,375,884 glmM DVU1283: galU - UTP-glucose-1-phosphate uridylyltransferase (TIGR), at 1,375,922 to 1,376,800 galU DVU1284: priA - primosomal protein n (TIGR), at 1,376,876 to 1,379,254 priA Position (kb) 1374 1375 1376Strain fitness (log2 ratio) -2 -1 0 1at 1373.816 kb on + strand, within DVU1281at 1373.841 kb on - strand, within DVU1281at 1374.004 kb on - strand, within DVU1281at 1374.026 kb on - strand, within DVU1281at 1374.135 kb on + strand, within DVU1281at 1374.166 kb on + strand, within DVU1281at 1374.261 kb on - strand, within DVU1281at 1374.293 kb on - strand, within DVU1281at 1374.315 kb on + strand, within DVU1281at 1374.325 kb on + strand, within DVU1281at 1374.331 kb on - strand, within DVU1281at 1374.345 kb on + strand, within DVU1281at 1374.363 kb on + strand, within DVU1281at 1374.409 kb on - strandat 1374.428 kb on - strandat 1374.444 kb on - strandat 1375.886 kb on + strandat 1375.926 kb on - strandat 1375.961 kb on + strandat 1376.137 kb on + strand, within galUat 1376.380 kb on + strand, within galUat 1376.524 kb on - strand, within galUat 1376.643 kb on + strand, within galUat 1376.788 kb on - strandat 1376.833 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Uranyl Acetate 1mM
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1,373,816 + DVU1281 0.27 -1.2
1,373,841 - DVU1281 0.30 +0.3
1,374,004 - DVU1281 0.48 +0.7
1,374,026 - DVU1281 0.50 -0.2
1,374,135 + DVU1281 0.63 +0.3
1,374,166 + DVU1281 0.66 +0.2
1,374,261 - DVU1281 0.77 -0.6
1,374,293 - DVU1281 0.80 -0.4
1,374,315 + DVU1281 0.83 -0.5
1,374,325 + DVU1281 0.84 +0.0
1,374,331 - DVU1281 0.84 -1.3
1,374,345 + DVU1281 0.86 +0.7
1,374,363 + DVU1281 0.88 -0.1
1,374,409 - +0.9
1,374,428 - -1.5
1,374,444 - +0.1
1,375,886 + +0.5
1,375,926 - -1.7
1,375,961 + -0.2
1,376,137 + galU DVU1283 0.24 +0.2
1,376,380 + galU DVU1283 0.52 -0.2
1,376,524 - galU DVU1283 0.68 +0.1
1,376,643 + galU DVU1283 0.82 +0.0
1,376,788 - -0.0
1,376,833 + -1.9

Or see this region's nucleotide sequence