Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1083

Experiment: MoYLS4 with Uranyl Acetate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1081 and DVU1082 are separated by 116 nucleotidesDVU1082 and phoB are separated by 173 nucleotidesphoB and pstB-1 are separated by 27 nucleotidespstB-1 and phoU are separated by 8 nucleotides DVU1081: DVU1081 - iron-sulfur cluster-binding protein (TIGR), at 1,184,609 to 1,186,228 DVU1081 DVU1082: DVU1082 - 3- 5 exonuclease domain protein (TIGR), at 1,186,345 to 1,186,953 DVU1082 DVU1083: phoB - phosphate regulon transcriptional regulator PhoB (TIGR), at 1,187,127 to 1,187,816 phoB DVU1084: pstB-1 - phosphate ABC transporter, ATP-binding protein (TIGR), at 1,187,844 to 1,188,611 pstB-1 DVU1085: phoU - phosphate transport system protein PhoU (TIGR), at 1,188,620 to 1,189,285 phoU Position (kb) 1187 1188Strain fitness (log2 ratio) -1 0 1 2at 1186.487 kb on + strand, within DVU1082at 1186.621 kb on - strand, within DVU1082at 1186.835 kb on + strand, within DVU1082at 1186.843 kb on - strand, within DVU1082at 1186.858 kb on - strand, within DVU1082at 1187.052 kb on + strandat 1187.064 kb on + strandat 1187.118 kb on + strandat 1187.873 kb on + strandat 1187.923 kb on - strand, within pstB-1at 1188.001 kb on + strand, within pstB-1at 1188.071 kb on + strand, within pstB-1at 1188.134 kb on + strand, within pstB-1at 1188.183 kb on + strand, within pstB-1at 1188.201 kb on - strand, within pstB-1at 1188.228 kb on + strand, within pstB-1at 1188.251 kb on + strand, within pstB-1at 1188.257 kb on - strand, within pstB-1at 1188.259 kb on - strand, within pstB-1at 1188.276 kb on + strand, within pstB-1at 1188.276 kb on + strand, within pstB-1at 1188.284 kb on - strand, within pstB-1at 1188.320 kb on - strand, within pstB-1at 1188.370 kb on - strand, within pstB-1at 1188.517 kb on - strand, within pstB-1at 1188.548 kb on + strandat 1188.572 kb on + strandat 1188.595 kb on - strandat 1188.716 kb on + strand, within phoUat 1188.807 kb on + strand, within phoU

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Uranyl Acetate 1mM
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1,186,487 + DVU1082 0.23 -1.1
1,186,621 - DVU1082 0.45 -0.0
1,186,835 + DVU1082 0.80 -1.1
1,186,843 - DVU1082 0.82 -0.5
1,186,858 - DVU1082 0.84 +0.1
1,187,052 + -0.4
1,187,064 + -1.0
1,187,118 + +2.7
1,187,873 + +0.0
1,187,923 - pstB-1 DVU1084 0.10 -1.3
1,188,001 + pstB-1 DVU1084 0.20 -0.1
1,188,071 + pstB-1 DVU1084 0.30 -0.5
1,188,134 + pstB-1 DVU1084 0.38 +0.3
1,188,183 + pstB-1 DVU1084 0.44 -0.6
1,188,201 - pstB-1 DVU1084 0.46 +0.4
1,188,228 + pstB-1 DVU1084 0.50 -0.5
1,188,251 + pstB-1 DVU1084 0.53 -0.3
1,188,257 - pstB-1 DVU1084 0.54 -0.2
1,188,259 - pstB-1 DVU1084 0.54 -0.3
1,188,276 + pstB-1 DVU1084 0.56 -0.2
1,188,276 + pstB-1 DVU1084 0.56 -0.5
1,188,284 - pstB-1 DVU1084 0.57 +0.3
1,188,320 - pstB-1 DVU1084 0.62 +0.3
1,188,370 - pstB-1 DVU1084 0.68 -0.1
1,188,517 - pstB-1 DVU1084 0.88 +0.0
1,188,548 + -0.4
1,188,572 + -0.1
1,188,595 - -0.2
1,188,716 + phoU DVU1085 0.14 +0.3
1,188,807 + phoU DVU1085 0.28 -0.2

Or see this region's nucleotide sequence