Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0942

Experiment: MoYLS4 with Uranyl Acetate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpep* and fur are separated by 76 nucleotidesfur and DVU0943 are separated by 493 nucleotides DVU0941: pep* - metalloprotease, iron-related (Dmitry Rodionov), at 1,031,522 to 1,034,416 pep* DVU0942: fur - ferric uptake regulator (Dmitry Rodionov), at 1,034,493 to 1,034,927 fur DVU0943: DVU0943 - membrane protein, putative (TIGR), at 1,035,421 to 1,037,160 DVU0943 Position (kb) 1034 1035Strain fitness (log2 ratio) -2 -1 0 1at 1033.499 kb on + strand, within pep*at 1033.609 kb on + strand, within pep*at 1033.621 kb on + strand, within pep*at 1033.680 kb on - strand, within pep*at 1033.715 kb on + strand, within pep*at 1033.789 kb on + strand, within pep*at 1033.897 kb on + strand, within pep*at 1033.966 kb on - strand, within pep*at 1033.966 kb on - strand, within pep*at 1034.084 kb on - strand, within pep*at 1034.084 kb on - strand, within pep*at 1034.123 kb on - strand, within pep*at 1034.334 kb on + strandat 1034.340 kb on + strandat 1034.450 kb on + strandat 1034.463 kb on - strandat 1034.934 kb on - strandat 1034.937 kb on + strandat 1034.957 kb on - strandat 1035.017 kb on + strandat 1035.101 kb on + strandat 1035.109 kb on - strandat 1035.124 kb on - strandat 1035.158 kb on + strandat 1035.196 kb on + strandat 1035.199 kb on - strandat 1035.259 kb on + strandat 1035.581 kb on + strandat 1035.594 kb on - strandat 1035.605 kb on + strand, within DVU0943at 1035.638 kb on - strand, within DVU0943at 1035.648 kb on + strand, within DVU0943at 1035.656 kb on - strand, within DVU0943at 1035.675 kb on + strand, within DVU0943at 1035.683 kb on - strand, within DVU0943at 1035.683 kb on - strand, within DVU0943at 1035.792 kb on + strand, within DVU0943at 1035.927 kb on + strand, within DVU0943at 1035.927 kb on + strand, within DVU0943

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Uranyl Acetate 1mM
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1,033,499 + pep* DVU0941 0.68 +1.1
1,033,609 + pep* DVU0941 0.72 +0.3
1,033,621 + pep* DVU0941 0.73 -0.1
1,033,680 - pep* DVU0941 0.75 -0.4
1,033,715 + pep* DVU0941 0.76 -1.9
1,033,789 + pep* DVU0941 0.78 +0.6
1,033,897 + pep* DVU0941 0.82 +0.1
1,033,966 - pep* DVU0941 0.84 -0.0
1,033,966 - pep* DVU0941 0.84 +0.1
1,034,084 - pep* DVU0941 0.88 -1.5
1,034,084 - pep* DVU0941 0.88 +1.6
1,034,123 - pep* DVU0941 0.90 +0.1
1,034,334 + -0.0
1,034,340 + -1.2
1,034,450 + +0.2
1,034,463 - -0.2
1,034,934 - -1.8
1,034,937 + -0.0
1,034,957 - -0.4
1,035,017 + -0.9
1,035,101 + +1.1
1,035,109 - -0.1
1,035,124 - -0.6
1,035,158 + -0.4
1,035,196 + -1.2
1,035,199 - +0.3
1,035,259 + -0.3
1,035,581 + +0.1
1,035,594 - -0.5
1,035,605 + DVU0943 0.11 +0.0
1,035,638 - DVU0943 0.12 -0.3
1,035,648 + DVU0943 0.13 +1.7
1,035,656 - DVU0943 0.14 +0.0
1,035,675 + DVU0943 0.15 +0.2
1,035,683 - DVU0943 0.15 -0.3
1,035,683 - DVU0943 0.15 -0.6
1,035,792 + DVU0943 0.21 +0.4
1,035,927 + DVU0943 0.29 -0.9
1,035,927 + DVU0943 0.29 -0.3

Or see this region's nucleotide sequence