Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0931

Experiment: MoYLS4 with Uranyl Acetate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntproB and thiD are separated by 78 nucleotidesthiD and DVU0932 are separated by 632 nucleotides DVU0930: proB - glutamate 5-kinase (TIGR), at 1,019,714 to 1,020,856 proB DVU0931: thiD - phosphomethylpyrimidine kinase (TIGR), at 1,020,935 to 1,021,741 thiD DVU0932: DVU0932 - sensor histidine kinase (TIGR), at 1,022,374 to 1,023,549 DVU0932 Position (kb) 1020 1021 1022Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1019.975 kb on + strand, within proBat 1019.975 kb on + strand, within proBat 1019.983 kb on - strand, within proBat 1020.305 kb on - strand, within proBat 1020.333 kb on + strand, within proBat 1020.353 kb on + strand, within proBat 1020.411 kb on + strand, within proBat 1020.424 kb on - strand, within proBat 1020.598 kb on - strand, within proBat 1020.668 kb on - strand, within proBat 1020.741 kb on + strand, within proBat 1020.754 kb on + strandat 1020.884 kb on + strandat 1020.899 kb on - strandat 1020.904 kb on + strandat 1020.907 kb on - strandat 1020.912 kb on - strandat 1021.779 kb on - strandat 1021.782 kb on + strandat 1021.822 kb on + strandat 1021.933 kb on + strandat 1021.941 kb on - strandat 1021.979 kb on + strandat 1022.015 kb on + strandat 1022.110 kb on + strandat 1022.110 kb on + strandat 1022.118 kb on - strandat 1022.169 kb on + strandat 1022.187 kb on - strandat 1022.195 kb on - strandat 1022.225 kb on - strandat 1022.237 kb on - strandat 1022.237 kb on - strandat 1022.275 kb on + strandat 1022.288 kb on - strandat 1022.352 kb on - strandat 1022.422 kb on - strandat 1022.441 kb on + strandat 1022.486 kb on - strandat 1022.490 kb on + strandat 1022.498 kb on - strand, within DVU0932at 1022.498 kb on - strand, within DVU0932at 1022.516 kb on - strand, within DVU0932at 1022.616 kb on - strand, within DVU0932at 1022.622 kb on + strand, within DVU0932at 1022.636 kb on + strand, within DVU0932at 1022.643 kb on + strand, within DVU0932at 1022.680 kb on + strand, within DVU0932at 1022.718 kb on + strand, within DVU0932

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Uranyl Acetate 1mM
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1,019,975 + proB DVU0930 0.23 -2.7
1,019,975 + proB DVU0930 0.23 -0.6
1,019,983 - proB DVU0930 0.24 -1.1
1,020,305 - proB DVU0930 0.52 -1.8
1,020,333 + proB DVU0930 0.54 -1.3
1,020,353 + proB DVU0930 0.56 -1.1
1,020,411 + proB DVU0930 0.61 -3.4
1,020,424 - proB DVU0930 0.62 +0.1
1,020,598 - proB DVU0930 0.77 +0.1
1,020,668 - proB DVU0930 0.83 -3.3
1,020,741 + proB DVU0930 0.90 -3.2
1,020,754 + -1.1
1,020,884 + +0.4
1,020,899 - -0.1
1,020,904 + -0.0
1,020,907 - +0.8
1,020,912 - -0.1
1,021,779 - -0.3
1,021,782 + -0.2
1,021,822 + +0.2
1,021,933 + +0.7
1,021,941 - -0.2
1,021,979 + -0.2
1,022,015 + -0.2
1,022,110 + -0.3
1,022,110 + -1.3
1,022,118 - -0.9
1,022,169 + +2.7
1,022,187 - -0.1
1,022,195 - +2.0
1,022,225 - +0.1
1,022,237 - +0.5
1,022,237 - -0.3
1,022,275 + -0.5
1,022,288 - -0.5
1,022,352 - -0.3
1,022,422 - +0.3
1,022,441 + -0.4
1,022,486 - -1.0
1,022,490 + +1.1
1,022,498 - DVU0932 0.11 -0.9
1,022,498 - DVU0932 0.11 +0.6
1,022,516 - DVU0932 0.12 -1.7
1,022,616 - DVU0932 0.21 -0.2
1,022,622 + DVU0932 0.21 -0.1
1,022,636 + DVU0932 0.22 -0.1
1,022,643 + DVU0932 0.23 -0.2
1,022,680 + DVU0932 0.26 -0.1
1,022,718 + DVU0932 0.29 -1.8

Or see this region's nucleotide sequence