Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0855

Experiment: MoYLS4 with Uranyl Acetate 1mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU0854 and DVU0855 are separated by 9 nucleotidesDVU0855 and hemB overlap by 1 nucleotides DVU0854: DVU0854 - NirD protein, putative (TIGR), at 944,038 to 944,568 DVU0854 DVU0855: DVU0855 - radical SAM domain protein (TIGR), at 944,578 to 945,759 DVU0855 DVU0856: hemB - porphobilinogen synthase (TIGR), at 945,759 to 946,751 hemB Position (kb) 944 945 946Strain fitness (log2 ratio) -1 0 1at 943.594 kb on - strandat 943.681 kb on + strandat 943.695 kb on + strandat 943.736 kb on + strandat 943.736 kb on + strandat 943.744 kb on - strandat 943.788 kb on - strandat 943.802 kb on + strandat 943.810 kb on - strandat 943.882 kb on + strandat 943.883 kb on + strandat 943.895 kb on + strandat 943.905 kb on - strandat 943.988 kb on - strandat 945.778 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Uranyl Acetate 1mM
remove
943,594 - +1.0
943,681 + +0.2
943,695 + -0.0
943,736 + -0.3
943,736 + +0.2
943,744 - -0.7
943,788 - -0.1
943,802 + +0.0
943,810 - +0.0
943,882 + -0.3
943,883 + +0.1
943,895 + -0.4
943,905 - +1.3
943,988 - -0.6
945,778 - -0.2

Or see this region's nucleotide sequence