Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0795

Experiment: MoYLS4 with Uranyl Acetate 1mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU0793 and fabI are separated by 2 nucleotidesfabI and purC are separated by 113 nucleotidespurC and hisD are separated by 16 nucleotides DVU0793: DVU0793 - hypothetical protein (TIGR), at 879,217 to 879,312 DVU0793 DVU0794: fabI - enoyl-(acyl-carrier-protein) reductase (TIGR), at 879,315 to 880,079 fabI DVU0795: purC - phosphoribosylaminoimidazole-succinocarboxamide synthase (TIGR), at 880,193 to 881,089 purC DVU0796: hisD - histidinol dehydrogenase (TIGR), at 881,106 to 882,416 hisD Position (kb) 880 881 882Strain fitness (log2 ratio) -3 -2 -1 0 1at 879.216 kb on - strandat 879.298 kb on + strand, within DVU0793at 879.635 kb on + strand, within fabIat 880.088 kb on + strandat 880.169 kb on + strandat 880.204 kb on + strandat 880.212 kb on - strandat 880.383 kb on + strand, within purCat 880.620 kb on - strand, within purCat 880.779 kb on - strand, within purCat 881.172 kb on - strandat 881.244 kb on + strand, within hisDat 881.397 kb on - strand, within hisDat 881.397 kb on - strand, within hisDat 881.411 kb on + strand, within hisDat 881.411 kb on + strand, within hisDat 881.602 kb on - strand, within hisDat 881.732 kb on - strand, within hisDat 881.732 kb on - strand, within hisDat 881.955 kb on - strand, within hisDat 882.023 kb on + strand, within hisDat 882.055 kb on - strand, within hisD

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Uranyl Acetate 1mM
remove
879,216 - -0.3
879,298 + DVU0793 0.84 +0.3
879,635 + fabI DVU0794 0.42 -1.1
880,088 + +0.2
880,169 + -1.2
880,204 + -0.3
880,212 - -0.9
880,383 + purC DVU0795 0.21 +0.7
880,620 - purC DVU0795 0.48 +0.7
880,779 - purC DVU0795 0.65 +1.1
881,172 - -1.1
881,244 + hisD DVU0796 0.11 -0.6
881,397 - hisD DVU0796 0.22 -0.3
881,397 - hisD DVU0796 0.22 -0.3
881,411 + hisD DVU0796 0.23 -0.9
881,411 + hisD DVU0796 0.23 -1.5
881,602 - hisD DVU0796 0.38 +1.1
881,732 - hisD DVU0796 0.48 -3.1
881,732 - hisD DVU0796 0.48 -0.6
881,955 - hisD DVU0796 0.65 -0.6
882,023 + hisD DVU0796 0.70 +1.1
882,055 - hisD DVU0796 0.72 -0.9

Or see this region's nucleotide sequence