Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around 11711908

Experiment: MoYLS4 with Uranyl Acetate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt11711877 and 11427123 are separated by 0 nucleotides11427123 and 11569486 overlap by 32 nucleotides11569486 and 11711878 overlap by 32 nucleotides11711878 and 11427124 are separated by 0 nucleotides11427124 and 11569487 overlap by 33 nucleotides11569487 and 11711879 overlap by 33 nucleotides11711879 and 11427125 are separated by 0 nucleotides11427125 and 11569488 overlap by 32 nucleotides11569488 and 11711880 overlap by 32 nucleotides11711880 and 11427126 are separated by 0 nucleotides11427126 and 11569489 overlap by 36 nucleotides11569489 and 11711881 overlap by 36 nucleotides11711881 and 11427127 are separated by 0 nucleotides11427127 and 11569490 overlap by 32 nucleotides11569490 and 11711882 overlap by 32 nucleotides11711882 and 11427128 are separated by 0 nucleotides11427128 and 11569491 overlap by 33 nucleotides11569491 and 11711883 overlap by 33 nucleotides11711883 and 11427129 are separated by 0 nucleotides11427129 and 11569492 overlap by 32 nucleotides11569492 and 11711884 overlap by 32 nucleotides11711884 and 11427130 are separated by 0 nucleotides11427130 and 11569493 overlap by 34 nucleotides11569493 and 11711885 overlap by 34 nucleotides11711885 and 11427131 are separated by 0 nucleotides11427131 and 11569494 overlap by 32 nucleotides11569494 and 11711886 overlap by 32 nucleotides11711886 and 11427132 are separated by 0 nucleotides11427132 and 11569495 overlap by 33 nucleotides11569495 and 11711887 overlap by 33 nucleotides11711887 and 11427133 are separated by 0 nucleotides11427133 and 11569496 overlap by 32 nucleotides11569496 and 11711888 overlap by 32 nucleotides11711888 and 11427134 are separated by 0 nucleotides11427134 and 11569497 overlap by 33 nucleotides11569497 and 11711889 overlap by 33 nucleotides11711889 and 11427135 are separated by 0 nucleotides11427135 and 11569498 overlap by 32 nucleotides11569498 and 11711890 overlap by 32 nucleotides11711890 and 11427136 are separated by 0 nucleotides11427136 and 11569499 overlap by 33 nucleotides11569499 and 11711891 overlap by 33 nucleotides11711891 and 11427137 are separated by 0 nucleotides11427137 and 11569500 overlap by 32 nucleotides11569500 and 11711892 overlap by 32 nucleotides11711892 and 11427138 are separated by 0 nucleotides11427138 and 11569501 overlap by 34 nucleotides11569501 and 11711893 overlap by 34 nucleotides11711893 and 11427139 are separated by 0 nucleotides11427139 and 11569502 overlap by 32 nucleotides11569502 and 11711894 overlap by 32 nucleotides11711894 and 11427140 are separated by 0 nucleotides11427140 and 11569503 overlap by 33 nucleotides11569503 and 11711895 overlap by 33 nucleotides11711895 and 11427141 are separated by 0 nucleotides11427141 and 11569504 overlap by 32 nucleotides11569504 and 11711896 overlap by 32 nucleotides11711896 and 11427142 are separated by 0 nucleotides11427142 and 11569505 overlap by 34 nucleotides11569505 and 11711897 overlap by 34 nucleotides11711897 and 11427143 are separated by 0 nucleotides11427143 and 11569506 overlap by 32 nucleotides11569506 and 11711898 overlap by 32 nucleotides11711898 and 11427144 are separated by 0 nucleotides11427144 and 11569507 overlap by 34 nucleotides11569507 and 11711899 overlap by 34 nucleotides11711899 and 11427145 are separated by 0 nucleotides11427145 and 11569508 overlap by 32 nucleotides11569508 and 11711900 overlap by 32 nucleotides11711900 and 11427146 are separated by 0 nucleotides11427146 and 11569509 overlap by 35 nucleotides11569509 and 11711901 overlap by 35 nucleotides11711901 and 11427147 are separated by 0 nucleotides11427147 and 11569510 overlap by 32 nucleotides11569510 and 11711902 overlap by 32 nucleotides11711902 and 11427148 are separated by 0 nucleotides11427148 and 11569511 overlap by 35 nucleotides11569511 and 11711903 overlap by 35 nucleotides11711903 and 11427149 are separated by 0 nucleotides11427149 and 11569512 overlap by 32 nucleotides11569512 and 11711904 overlap by 32 nucleotides11711904 and 11427150 are separated by 0 nucleotides11427150 and 11569513 overlap by 33 nucleotides11569513 and 11711905 overlap by 33 nucleotides11711905 and 11427151 are separated by 0 nucleotides11427151 and 11569514 overlap by 32 nucleotides11569514 and 11711906 overlap by 32 nucleotides11711906 and 11427152 are separated by 0 nucleotides11427152 and 11569515 overlap by 35 nucleotides11569515 and 11711907 overlap by 35 nucleotides11711907 and 11427153 are separated by 0 nucleotides11427153 and 11569516 overlap by 32 nucleotides11569516 and 11711908 overlap by 32 nucleotides11711908 and zupT are separated by 116 nucleotides 11427122 - no description, at 176,659 to 176,691 11427122 11569485 - no description, at 176,659 to 176,691 11569485 11711877 - no description, at 176,659 to 176,691 11711877 11427123 - no description, at 176,692 to 176,723 11427123 11569486 - no description, at 176,692 to 176,723 11569486 11711878 - no description, at 176,692 to 176,723 11711878 11427124 - no description, at 176,724 to 176,756 11427124 11569487 - no description, at 176,724 to 176,756 11569487 11711879 - no description, at 176,724 to 176,756 11711879 11427125 - no description, at 176,757 to 176,788 11427125 11569488 - no description, at 176,757 to 176,788 11569488 11711880 - no description, at 176,757 to 176,788 11711880 11427126 - no description, at 176,789 to 176,824 11427126 11569489 - no description, at 176,789 to 176,824 11569489 11711881 - no description, at 176,789 to 176,824 11711881 11427127 - no description, at 176,825 to 176,856 11427127 11569490 - no description, at 176,825 to 176,856 11569490 11711882 - no description, at 176,825 to 176,856 11711882 11427128 - no description, at 176,857 to 176,889 11427128 11569491 - no description, at 176,857 to 176,889 11569491 11711883 - no description, at 176,857 to 176,889 11711883 11427129 - no description, at 176,890 to 176,921 11427129 11569492 - no description, at 176,890 to 176,921 11569492 11711884 - no description, at 176,890 to 176,921 11711884 11427130 - no description, at 176,922 to 176,955 11427130 11569493 - no description, at 176,922 to 176,955 11569493 11711885 - no description, at 176,922 to 176,955 11711885 11427131 - no description, at 176,956 to 176,987 11427131 11569494 - no description, at 176,956 to 176,987 11569494 11711886 - no description, at 176,956 to 176,987 11711886 11427132 - no description, at 176,988 to 177,020 11427132 11569495 - no description, at 176,988 to 177,020 11569495 11711887 - no description, at 176,988 to 177,020 11711887 11427133 - no description, at 177,021 to 177,052 11427133 11569496 - no description, at 177,021 to 177,052 11569496 11711888 - no description, at 177,021 to 177,052 11711888 11427134 - no description, at 177,053 to 177,085 11427134 11569497 - no description, at 177,053 to 177,085 11569497 11711889 - no description, at 177,053 to 177,085 11711889 11427135 - no description, at 177,086 to 177,117 11427135 11569498 - no description, at 177,086 to 177,117 11569498 11711890 - no description, at 177,086 to 177,117 11711890 11427136 - no description, at 177,118 to 177,150 11427136 11569499 - no description, at 177,118 to 177,150 11569499 11711891 - no description, at 177,118 to 177,150 11711891 11427137 - no description, at 177,151 to 177,182 11427137 11569500 - no description, at 177,151 to 177,182 11569500 11711892 - no description, at 177,151 to 177,182 11711892 11427138 - no description, at 177,183 to 177,216 11427138 11569501 - no description, at 177,183 to 177,216 11569501 11711893 - no description, at 177,183 to 177,216 11711893 11427139 - no description, at 177,217 to 177,248 11427139 11569502 - no description, at 177,217 to 177,248 11569502 11711894 - no description, at 177,217 to 177,248 11711894 11427140 - no description, at 177,249 to 177,281 11427140 11569503 - no description, at 177,249 to 177,281 11569503 11711895 - no description, at 177,249 to 177,281 11711895 11427141 - no description, at 177,282 to 177,313 11427141 11569504 - no description, at 177,282 to 177,313 11569504 11711896 - no description, at 177,282 to 177,313 11711896 11427142 - no description, at 177,314 to 177,347 11427142 11569505 - no description, at 177,314 to 177,347 11569505 11711897 - no description, at 177,314 to 177,347 11711897 11427143 - no description, at 177,348 to 177,379 11427143 11569506 - no description, at 177,348 to 177,379 11569506 11711898 - no description, at 177,348 to 177,379 11711898 11427144 - no description, at 177,380 to 177,413 11427144 11569507 - no description, at 177,380 to 177,413 11569507 11711899 - no description, at 177,380 to 177,413 11711899 11427145 - no description, at 177,414 to 177,445 11427145 11569508 - no description, at 177,414 to 177,445 11569508 11711900 - no description, at 177,414 to 177,445 11711900 11427146 - no description, at 177,446 to 177,480 11427146 11569509 - no description, at 177,446 to 177,480 11569509 11711901 - no description, at 177,446 to 177,480 11711901 11427147 - no description, at 177,481 to 177,512 11427147 11569510 - no description, at 177,481 to 177,512 11569510 11711902 - no description, at 177,481 to 177,512 11711902 11427148 - no description, at 177,513 to 177,547 11427148 11569511 - no description, at 177,513 to 177,547 11569511 11711903 - no description, at 177,513 to 177,547 11711903 11427149 - no description, at 177,548 to 177,579 11427149 11569512 - no description, at 177,548 to 177,579 11569512 11711904 - no description, at 177,548 to 177,579 11711904 11427150 - no description, at 177,580 to 177,612 11427150 11569513 - no description, at 177,580 to 177,612 11569513 11711905 - no description, at 177,580 to 177,612 11711905 11427151 - no description, at 177,613 to 177,644 11427151 11569514 - no description, at 177,613 to 177,644 11569514 11711906 - no description, at 177,613 to 177,644 11711906 11427152 - no description, at 177,645 to 177,679 11427152 11569515 - no description, at 177,645 to 177,679 11569515 11711907 - no description, at 177,645 to 177,679 11711907 11427153 - no description, at 177,680 to 177,711 11427153 11569516 - no description, at 177,680 to 177,711 11569516 11711908 - no description, at 177,680 to 177,711 11711908 DVUA0136: zupT - zinc transporter (TIGR), at 177,828 to 178,661 zupT Position (kb) 177 178Strain fitness (log2 ratio) -1 0 1 2at 176.746 kb on - strandat 176.753 kb on - strandat 176.962 kb on - strandat 176.987 kb on - strandat 176.989 kb on + strandat 177.004 kb on + strandat 177.006 kb on + strandat 177.006 kb on + strandat 177.076 kb on + strandat 177.128 kb on + strandat 177.136 kb on - strandat 177.156 kb on + strandat 177.272 kb on + strandat 177.387 kb on - strandat 177.403 kb on + strandat 177.446 kb on - strandat 177.455 kb on + strandat 177.498 kb on + strandat 177.534 kb on - strandat 177.546 kb on + strandat 177.613 kb on + strandat 177.625 kb on - strandat 177.678 kb on + strandat 177.760 kb on + strandat 177.760 kb on + strandat 177.760 kb on + strandat 177.768 kb on - strandat 177.815 kb on + strandat 177.886 kb on + strandat 177.893 kb on + strandat 177.904 kb on + strandat 177.917 kb on - strand, within zupTat 177.969 kb on + strand, within zupTat 177.983 kb on - strand, within zupTat 178.060 kb on - strand, within zupTat 178.131 kb on - strand, within zupTat 178.178 kb on + strand, within zupTat 178.220 kb on + strand, within zupTat 178.235 kb on - strand, within zupTat 178.267 kb on + strand, within zupTat 178.267 kb on + strand, within zupTat 178.276 kb on - strand, within zupTat 178.428 kb on + strand, within zupTat 178.445 kb on + strand, within zupTat 178.453 kb on - strand, within zupTat 178.509 kb on + strand, within zupTat 178.543 kb on + strand, within zupTat 178.589 kb on + strandat 178.597 kb on - strandat 178.602 kb on + strandat 178.627 kb on - strandat 178.648 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Uranyl Acetate 1mM
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176,746 - +0.7
176,753 - -0.9
176,962 - +0.1
176,987 - -0.5
176,989 + -0.5
177,004 + +0.2
177,006 + -0.4
177,006 + -0.4
177,076 + +0.1
177,128 + -0.1
177,136 - -0.1
177,156 + -1.2
177,272 + -0.5
177,387 - -0.4
177,403 + +1.8
177,446 - +0.3
177,455 + +0.3
177,498 + -0.0
177,534 - -0.3
177,546 + +0.7
177,613 + +0.3
177,625 - -0.2
177,678 + -0.5
177,760 + +0.0
177,760 + -0.1
177,760 + -0.2
177,768 - -0.1
177,815 + -0.2
177,886 + -0.1
177,893 + +0.2
177,904 + +1.9
177,917 - zupT DVUA0136 0.11 -0.1
177,969 + zupT DVUA0136 0.17 -0.5
177,983 - zupT DVUA0136 0.19 -0.0
178,060 - zupT DVUA0136 0.28 -0.7
178,131 - zupT DVUA0136 0.36 -0.6
178,178 + zupT DVUA0136 0.42 -0.5
178,220 + zupT DVUA0136 0.47 +0.5
178,235 - zupT DVUA0136 0.49 -0.8
178,267 + zupT DVUA0136 0.53 +2.1
178,267 + zupT DVUA0136 0.53 +0.4
178,276 - zupT DVUA0136 0.54 +0.0
178,428 + zupT DVUA0136 0.72 -1.0
178,445 + zupT DVUA0136 0.74 +1.0
178,453 - zupT DVUA0136 0.75 +0.8
178,509 + zupT DVUA0136 0.82 +0.5
178,543 + zupT DVUA0136 0.86 -0.1
178,589 + +0.0
178,597 - -0.0
178,602 + -0.0
178,627 - +0.2
178,648 - +0.3

Or see this region's nucleotide sequence