Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF15009

Experiment: MoYLS4 with Uranyl Acetate 1mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfprA-1 and DORF15009 overlap by 4 nucleotidesDORF15009 and DVU2016 overlap by 115 nucleotidesDVU2016 and DVU2017 are separated by 43 nucleotides DVU2014: fprA-1 - metallo-beta-lactamase family protein (TIGR), at 2,092,404 to 2,093,579 fprA-1 DORF15009: DORF15009 - SEED: Response regulator containing a CheY-like receiver domain and a GGDEF domain, at 2,093,576 to 2,093,878 DORF15009 DVU2016: DVU2016 - GGDEF domain protein (TIGR), at 2,093,764 to 2,094,645 DVU2016 DVU2017: DVU2017 - ISDvu5, transposase (TIGR), at 2,094,689 to 2,095,930 DVU2017 Position (kb) 2093 2094Strain fitness (log2 ratio) -1 0 1at 2092.648 kb on + strand, within fprA-1at 2092.665 kb on + strand, within fprA-1at 2092.812 kb on - strand, within fprA-1at 2092.862 kb on - strand, within fprA-1at 2092.911 kb on + strand, within fprA-1at 2093.082 kb on + strand, within fprA-1at 2093.167 kb on - strand, within fprA-1at 2093.256 kb on + strand, within fprA-1at 2093.272 kb on - strand, within fprA-1at 2093.286 kb on + strand, within fprA-1at 2093.313 kb on - strand, within fprA-1at 2093.399 kb on - strand, within fprA-1at 2093.424 kb on - strand, within fprA-1at 2093.504 kb on + strandat 2094.049 kb on + strand, within DVU2016at 2094.391 kb on + strand, within DVU2016at 2094.391 kb on + strand, within DVU2016at 2094.666 kb on - strandat 2094.701 kb on + strandat 2094.765 kb on + strandat 2094.766 kb on - strandat 2094.773 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Uranyl Acetate 1mM
remove
2,092,648 + fprA-1 DVU2014 0.21 -0.2
2,092,665 + fprA-1 DVU2014 0.22 -0.2
2,092,812 - fprA-1 DVU2014 0.35 -1.0
2,092,862 - fprA-1 DVU2014 0.39 -1.1
2,092,911 + fprA-1 DVU2014 0.43 -0.1
2,093,082 + fprA-1 DVU2014 0.58 -1.7
2,093,167 - fprA-1 DVU2014 0.65 +0.4
2,093,256 + fprA-1 DVU2014 0.72 +0.4
2,093,272 - fprA-1 DVU2014 0.74 +0.9
2,093,286 + fprA-1 DVU2014 0.75 -0.1
2,093,313 - fprA-1 DVU2014 0.77 -1.5
2,093,399 - fprA-1 DVU2014 0.85 -0.1
2,093,424 - fprA-1 DVU2014 0.87 -1.5
2,093,504 + +0.2
2,094,049 + DVU2016 0.32 -0.4
2,094,391 + DVU2016 0.71 -0.0
2,094,391 + DVU2016 0.71 -0.8
2,094,666 - +0.5
2,094,701 + +0.1
2,094,765 + -0.1
2,094,766 - -0.6
2,094,773 - +0.7

Or see this region's nucleotide sequence