Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20570 and BWI76_RS20575 are separated by 259 nucleotides BWI76_RS20575 and BWI76_RS20580 are separated by 44 nucleotides BWI76_RS20580 and BWI76_RS20585 are separated by 46 nucleotides BWI76_RS20585 and BWI76_RS20590 are separated by 4 nucleotides BWI76_RS20590 and BWI76_RS20595 are separated by 89 nucleotides BWI76_RS20595 and BWI76_RS20600 are separated by 96 nucleotides
BWI76_RS20570: BWI76_RS20570 - glutamate--tRNA ligase, at 4,307,321 to 4,308,739
_RS20570
BWI76_RS20575: BWI76_RS20575 - tRNA-Val, at 4,308,999 to 4,309,074
_RS20575
BWI76_RS20580: BWI76_RS20580 - tRNA-Val, at 4,309,119 to 4,309,194
_RS20580
BWI76_RS20585: BWI76_RS20585 - tRNA-Val, at 4,309,241 to 4,309,316
_RS20585
BWI76_RS20590: BWI76_RS20590 - tRNA-Lys, at 4,309,321 to 4,309,396
_RS20590
BWI76_RS20595: BWI76_RS20595 - LysR family transcriptional regulator, at 4,309,486 to 4,310,370
_RS20595
BWI76_RS20600: BWI76_RS20600 - nucleoside permease, at 4,310,467 to 4,311,723
_RS20600
Position (kb) 4309
4310
4311 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4309.435 kb on + strand at 4309.539 kb on + strand at 4309.766 kb on - strand, within BWI76_RS20595 at 4309.881 kb on - strand, within BWI76_RS20595 at 4309.887 kb on + strand at 4310.179 kb on + strand, within BWI76_RS20595 at 4310.179 kb on + strand, within BWI76_RS20595 at 4310.179 kb on + strand, within BWI76_RS20595 at 4310.179 kb on + strand, within BWI76_RS20595 at 4310.179 kb on + strand, within BWI76_RS20595 at 4310.187 kb on - strand, within BWI76_RS20595 at 4310.187 kb on - strand, within BWI76_RS20595 at 4310.272 kb on - strand, within BWI76_RS20595 at 4310.394 kb on + strand at 4310.414 kb on + strand at 4310.660 kb on + strand, within BWI76_RS20600 at 4310.775 kb on - strand, within BWI76_RS20600 at 4310.796 kb on + strand, within BWI76_RS20600 at 4310.804 kb on - strand, within BWI76_RS20600 at 4310.811 kb on - strand, within BWI76_RS20600 at 4310.842 kb on + strand, within BWI76_RS20600 at 4310.849 kb on + strand, within BWI76_RS20600 at 4311.241 kb on - strand, within BWI76_RS20600 at 4311.241 kb on - strand, within BWI76_RS20600 at 4311.255 kb on + strand, within BWI76_RS20600 at 4311.263 kb on - strand, within BWI76_RS20600
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 4,309,435 + -1.4 4,309,539 + -1.0 4,309,766 - BWI76_RS20595 0.32 -0.2 4,309,881 - BWI76_RS20595 0.45 -0.2 4,309,887 + +2.0 4,310,179 + BWI76_RS20595 0.78 +1.4 4,310,179 + BWI76_RS20595 0.78 +0.7 4,310,179 + BWI76_RS20595 0.78 +0.1 4,310,179 + BWI76_RS20595 0.78 +0.3 4,310,179 + BWI76_RS20595 0.78 +0.3 4,310,187 - BWI76_RS20595 0.79 -2.1 4,310,187 - BWI76_RS20595 0.79 +0.4 4,310,272 - BWI76_RS20595 0.89 -0.3 4,310,394 + -0.1 4,310,414 + -0.6 4,310,660 + BWI76_RS20600 0.15 +0.5 4,310,775 - BWI76_RS20600 0.25 -0.1 4,310,796 + BWI76_RS20600 0.26 +1.1 4,310,804 - BWI76_RS20600 0.27 -1.2 4,310,811 - BWI76_RS20600 0.27 -0.2 4,310,842 + BWI76_RS20600 0.30 +0.2 4,310,849 + BWI76_RS20600 0.30 -0.4 4,311,241 - BWI76_RS20600 0.62 +0.1 4,311,241 - BWI76_RS20600 0.62 +0.7 4,311,255 + BWI76_RS20600 0.63 -0.5 4,311,263 - BWI76_RS20600 0.63 +0.6
Or see this region's nucleotide sequence