Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12940 and BWI76_RS12945 are separated by 57 nucleotides BWI76_RS12945 and BWI76_RS12950 are separated by 334 nucleotides BWI76_RS12950 and BWI76_RS12955 are separated by 23 nucleotides
BWI76_RS12940: BWI76_RS12940 - AraC family transcriptional regulator, at 2,696,036 to 2,696,857
_RS12940
BWI76_RS12945: BWI76_RS12945 - AraC family transcriptional regulator, at 2,696,915 to 2,697,310
_RS12945
BWI76_RS12950: BWI76_RS12950 - acriflavin resistance protein AcrA, at 2,697,645 to 2,698,820
_RS12950
BWI76_RS12955: BWI76_RS12955 - multidrug efflux RND transporter permease subunit OqxB, at 2,698,844 to 2,701,996
_RS12955
Position (kb)
2697
2698
2699 Strain fitness (log2 ratio)
-2
-1
0
1 at 2696.777 kb on - strand at 2696.859 kb on - strand at 2696.859 kb on - strand at 2697.835 kb on - strand, within BWI76_RS12950 at 2698.088 kb on - strand, within BWI76_RS12950 at 2698.297 kb on + strand, within BWI76_RS12950 at 2699.211 kb on - strand, within BWI76_RS12955 at 2699.420 kb on - strand, within BWI76_RS12955 at 2699.643 kb on - strand, within BWI76_RS12955
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 2,696,777 - +0.2 2,696,859 - -0.8 2,696,859 - +0.6 2,697,835 - BWI76_RS12950 0.16 -0.4 2,698,088 - BWI76_RS12950 0.38 -1.2 2,698,297 + BWI76_RS12950 0.55 -1.8 2,699,211 - BWI76_RS12955 0.12 -0.7 2,699,420 - BWI76_RS12955 0.18 -1.0 2,699,643 - BWI76_RS12955 0.25 -0.3
Or see this region's nucleotide sequence